Gene Rfer_3411 details

Gene Information

• Locus tag: Rfer_3411
• ID: 3963337
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 3794794
• End bp: 3796881
• Gene Length: 2088 bp
• Protein Length: 695 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637918231
• Product: ribonuclease II
• Protein accession: YP_524651
• Protein GI: 89902180
• COG category: [K] Transcription
• COG ID: [COG0557] Exoribonuclease R

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTTAC TCTTTGAAGA AGCCGGAAAA TTTATGGCCG GTCGGGTGCT GTCTGAAGCG 
GAGACGTCTG CGCAGGTGGA ATTGGACAGC GGCAAACGGG TCAAGGTGAA GGCCGCCAAC 
TTTTTGCTTA AATTTGAGAA ACCAACGCCA GCGCAGTTTG TGCTGGAGGC GCAGGCGCTC 
AGCCAGACGA TCGAGCTGGA GCTGGCCTGG GAGTTTGCGC CGGAAGAAGA ATTTGGTTTT 
GCCGACCTGG CGCGCGACTA TTTTTCACTG CACGCCACCT TAAGCGAACA GGCCGGCATG 
CTGGTGCGCC TGTTTGAGGC GCCGCATTAC TTTCGCCGCG CGGGCAAGGG GCGTTTTCGC 
AAGGCCCCGG CCGACATCAT CGCGCTGGCC CTGGCCGCGA TCGAGAAAAA GAAACTGATC 
GCGCAGCAAA CCGAGCAGTG GGTCGCCGAG CTGAGCCAGG GCAGTTGCCC GCAGCCGATC 
CGCGACCAGC TTTACAAAAT CCTGTTCAAG CCCGACAAAA ACGCGCCCGA GTACAAGGCG 
GTGGTGGAAG CCTCGCGCGC CACGCATCTG GGGCCGCTGG AGTTGCTGAT CAAAGCCGGT 
GCCATCGATT CACCGTACCA GTTTCACTGG AAGCGCTTCC TGCTGGAGAA CTTCCCCAGG 
GGCGTGGGCT TTGCCAAGAT CGATGCGCCA CTGATCAAGG ACGAGTTGCC CCTGTCACCA 
GCGCGGGCAT TTTCAGTTGA CGACTCGGCC ACCACCGAAA TTGACGACGC GCTCTCGGTG 
CAGGGCCTGG GCACCGGCAC CGTGCGGCTG GGCATCCACA TTGCGGCGCC CGGGCTGGCG 
TTTCAACCCG GCAGTGCGAT TGACCAATTG GGCCGCAACC GCCTGTCCAC CGTCTACATG 
CCGGGCTACA AGATCACCAT GCTGCCCGAC GAGGTGGTGC AAAACTACAC CTTGATGGAG 
GGACGCGACT GCCCGGCGGT GTCGCTGTAT GTGACGCTGG ACGAAGCCAC GCTGGAGATC 
AAGAGTACCG AGACGCAACT GGAGCGGGTG CACATCGGTG CCAATCTGCG CCATGACCAG 
CTGGACGCCA TCGTCACCAC CGAATGGCTG GAAGACCCCG GCTTTATGCA TGAAATGGAC 
CCCCAGCCCT TACAGCATAA GCGTGAGCAG CTCTCATTTT TATACCGCTT GGCGAATGAC 
CTGAAAGCCA AACGCGAAGT GGTGCGGGGC AAACCGGAGA ACTTCAACCG GCCCGATTAC 
AACTTCAAGC TGGTGGGCAA TGACGGGGCC GAGCCGCAGG GCACCGAGCA GGTGCAGATC 
AGCACCCGCC AGCGCGGCGC GCCGCTGGAC CTGATTGTCT CCGAGGCCAT GATTCTGGCC 
AACAGCACCT GGGGCAGCTG GATGGCGGAG CTGGGGGTGC CCGGCATTTA CCGCAGTCAG 
GCCTCGATGT TGCCGGGCGT CAAGGTGCGC ATGGGCACCC GCTCCTTGCC CCATGCCGGC 
CTGGGTGTCA AAAGCTATGC CTGGAGCAGC TCGCCGCTGC GCCGTTACGT CGACCTGGTC 
AACCAGTGGC AAATCATTGC CTGCGCCCGC CACGGTAAAA CCGCCGCCTT GGCCGCGCCC 
TTCAAGCCCA AAGACGCCGA GCTGTTTTCG ATCATTTCCG GCTTTGATGC CGCCTACTTT 
GCCTACAACA GCTTTCAGGG TGCGATGGAG CGCTTCTGGA CGCTCAAATA CGTGCAGCAG 
CAAGGCATTG TCGAAATTGA AGCCACGCTG TTCAAGGACA ACCTGGTGCG CGCCGACCAC 
CTGCCGCTGG TGCTGCCGGT GATGGGTGCG CAAGGCTTGC CACGCGGGGC CCGGGTGCGG 
GTCAAACTCG GAGACATTGA CGAGGTGTCG CTGGACGTGC ATGGCACCGT GATCGAGCGG 
CTTGACCTGC CGCTTGAGAC CGAGGCCGAG ATCGAGGCCG ACGAAGAAGA CGATCTCACG 
GTCGCCGGCC CGATTGCCAT TGCCGTTGAC ATGAGCGAGC CCGCCGCCGA CAGCCTTGAA 
AATGGCAGCA ACCCGGCCCA GGCCGCCGCC GACAACCCTG CCCCGTGA 

 

Protein sequence

MFLLFEEAGK FMAGRVLSEA ETSAQVELDS GKRVKVKAAN FLLKFEKPTP AQFVLEAQAL 
SQTIELELAW EFAPEEEFGF ADLARDYFSL HATLSEQAGM LVRLFEAPHY FRRAGKGRFR 
KAPADIIALA LAAIEKKKLI AQQTEQWVAE LSQGSCPQPI RDQLYKILFK PDKNAPEYKA 
VVEASRATHL GPLELLIKAG AIDSPYQFHW KRFLLENFPR GVGFAKIDAP LIKDELPLSP 
ARAFSVDDSA TTEIDDALSV QGLGTGTVRL GIHIAAPGLA FQPGSAIDQL GRNRLSTVYM 
PGYKITMLPD EVVQNYTLME GRDCPAVSLY VTLDEATLEI KSTETQLERV HIGANLRHDQ 
LDAIVTTEWL EDPGFMHEMD PQPLQHKREQ LSFLYRLAND LKAKREVVRG KPENFNRPDY 
NFKLVGNDGA EPQGTEQVQI STRQRGAPLD LIVSEAMILA NSTWGSWMAE LGVPGIYRSQ 
ASMLPGVKVR MGTRSLPHAG LGVKSYAWSS SPLRRYVDLV NQWQIIACAR HGKTAALAAP 
FKPKDAELFS IISGFDAAYF AYNSFQGAME RFWTLKYVQQ QGIVEIEATL FKDNLVRADH 
LPLVLPVMGA QGLPRGARVR VKLGDIDEVS LDVHGTVIER LDLPLETEAE IEADEEDDLT 
VAGPIAIAVD MSEPAADSLE NGSNPAQAAA DNPAP