Gene Rfer_3335 details

Gene Information

• Locus tag: Rfer_3335
• ID: 3963034
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 3700825
• End bp: 3701514
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637918155
• Product: fimbrial assembly
• Protein accession: YP_524575
• Protein GI: 89902104
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3166] Tfp pilus assembly protein PilN

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.345488
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCAGC AAATCAACCT CTGTACCCCG ATTCTGTTGA CGCAAAAGCG TTACTTTTCG 
GCGCAAACCA TGGCGCAGGC CTTGGCGGTG TTTGTGCTGT TGGGGGGCGG TCTGTGCGCC 
TATTGGGTCT GGAGTCTGAA CGCCGCCAGC GAAGGTTTCA AAAAGACGCT GGCAACCCAG 
TCGCAAGAGC TGGAGAGCTT GCAGGTTGCC ATCAAGCAGG GCAAGCTTGG CACAGGCCCG 
CTGGAAGCCG CCTTGGCGCA GCAGTTGCAG GGCCACAAGC TTGATTTGCA GCAACGCCAG 
AGTTTGATGG AAGCGCTGCA GCGCGGTTTG TTTCGACCTG GCTGGGGCCA TGCGGCACGC 
CTGCAGTTGG TGGCGCGCAG CATCCCGGCG CAAGTGTGGG TCACGGAGCT GAAGGCCGAT 
GACAATCAAC TGGCGCTCAC TGGCTTTACG CTGGAGCCCG CGGCACTCAA TGACTGGGTC 
GGCAAGCTGG CAGCCAGCCC GCTGCTGGAA GGACAAAAGT TGTCAACCGT CAAGGTGGAG 
CATGCCAGCG CCGCGGTGCT GAAAACCCTG GCTGGCACGG CAGTGCCTGC GGCGGTCTCG 
GCCAGCGCTT CTGCGGCGCG ACCGATGTGG TCATTCAGCC TGGTCAGCGC GCTGGGCAAG 
CCAGCCCCGC AAACGGGGGT CAAACCATGA 

 

Protein sequence

MPQQINLCTP ILLTQKRYFS AQTMAQALAV FVLLGGGLCA YWVWSLNAAS EGFKKTLATQ 
SQELESLQVA IKQGKLGTGP LEAALAQQLQ GHKLDLQQRQ SLMEALQRGL FRPGWGHAAR 
LQLVARSIPA QVWVTELKAD DNQLALTGFT LEPAALNDWV GKLAASPLLE GQKLSTVKVE 
HASAAVLKTL AGTAVPAAVS ASASAARPMW SFSLVSALGK PAPQTGVKP