| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2485 |
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| Symbol | |
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| ID | 3962978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2741667 |
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| End bp | 2744621 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637917304 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_523733 |
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| Protein GI | 89901262 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.122188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAATC TCAATCAGGG ACTGGACCGG CTGCTGTACG CGCTCTCGAC CTACGCACTG
CCCTTCTTTA TCGGATTGAT GTCTTTACTG GCCCTTTTTG CCTGGAAAAC GCAATACCCG
GCGGCCGACC CACAACAGCT GCAAATTCGG GTGATCAAAG AGTCAGCCGC CGTGGCGGGT
CCCGCTCAGG CCCTGGCGCA GTTACGGGAG AGCTCGATCA GCCAATTCCA CGACACCCGG
CTTTCCGAGG TTCCTGTCTG GCTGACCTTT GTAGTACCCG AAGACGTTGA ACACACACCC
ATGATGGTCG AATTTCCCTC GCGGCATGCC ATGGACATCG CCTGCTGGGA TGCCAGGACG
CTGAAAGCGC TTGGCACTGG CAATCACCAA GGCACGACTG GCGGCATTAC CGCTATCAAG
GCGGGTTTTG CGCTTGAACT CAGTCCAGCA CTCAAAGACG AGCAAGTGGT ATGCCGCACC
AGTGCTATCG GCCCGGCCCG TCTATCCGCT CTGATTTGGC GAGCTAACAA TTTACAAACT
TCCGCCCAGG AGTTTCACCG CAAGTCAGGC CTGCTGGATG GCGGGATCAT CGTGCTGGCG
ATTTTTGTGC TGGTCACGGC TTTGATCAAT CGAAACCGCC TGTATGTCCT GTTCGCGGCT
TGGCTCGTGA TCAATCTGAG AATGGGGGCT CTTTCTGCCG GGTGGGATAC GCAGTGGCTT
GGCTACACGG TGCCCTACGA CTGGTTGTTA CAAGGCAGGA TGATCACCAT TACCCTGTAC
TACGTGCTGA CACTGATACT GTTCACGTCA CTTTTCAGAG ATGATTTATT GCACGTTGGA
CATGAGTGGC TCGTGCGTGT ATTTCAGTGG ACATGTTTTC CCTTGCTCAT ACTGTCAAGT
TTTCTGCCAT CCTCTTCGTA TCTACCGCTG TTTTGGCCCG TTGTTGGCGC TGGCATTTCA
ATGTTGGCAT ACCTTCTGGT TCGCATTCTG CGAAAAACGC GTTCCCGTGT CGCAATGTGG
TATGGCGCCG CCATCAGCAT CACCTTGGTC GCAAGTTTTT ACGAGGTTCT TTCTGCGGCG
CTAGGCATCA AAGGACTAAT CGGATCGGTC AATAGCGTGA CTGCCGCCTT GGTGTCAAGC
CTGCTGGCCG CCTTGGCGAT TGCCGAACAA ATGCGGCACG AGCATGTGCA GCGCCTGGAA
GTGCAGGCCA AACTGGAGCA CACCTACGCG GCCATGCCGA TCGGCCTCTT CACCCTCGAC
CTGCGTGGCC GCTTCACGAG TGCCAACCCC GCCCTGGTCG GCATGCTGGG ACCGAATGTG
CTGACCGATG GCGCCAATGC CTGGCAGCAG TATTTCACCA ATGGTGCCTG GACCCAGCTG
CATCAAATGG TGCATAACAA AAGTGAAGAT GAAATGGAAA TCCAGGGCAA ACCCGTGCCT
GGCTACAGTG GTTCAAAATG TTTTCTCGTC AAGGCAACGC TGGCTGGCGA CAAGATCGAG
GGTTCATTGC AGGACGTCAC CGAAAAATCC AGGGCCACCG CGGATCTGTA TTTCCTGGCC
GACCATGATT CACTGACCAA GGTGCTGAAC CGGCGCGGTA TCGCGAAAGC GTTCAACAGC
GCCATTGCCA GTCTGACTGA CCGTAATGCA CCCGTGGCCC TGGCCTATCT TGACCTCGAC
CGTTTCAAGC TGATCAACGA CCTGTTTGGC CACGGGGTCG GCGATGAAGT GTTGCAGCAA
GTATGCGGGC GCGTGTCGGA CCTGCTTTCC CGCGAACTCC AATTTGGCCG CGTTGGCGGT
GATGAGTTCG TCATCGTGTT TCCCGACACG CCCATTGCAC GGGCCGCGGT CATGTGCCGC
GGCATCATCG ACAGCATTGA CACCCTGCCC TACCATGTTG GCGAAAACGC GTTTCATGTG
CGCGGCTCCA TCGGACTTAT CGAGGTCAGG GCCGGCATGC AGTTCAACGA CGCCATGTCC
ACTGCCGACC GCGCGTGTCG CCAGGCCAAG TCCGGCAGCA GTGGCGGCCT GGTGGTGTAT
GAAAAAAATG CCATCGCGTT CAAAAAGCAT GAGGCCGAGC TCAAACTGAT TGCGCTGCTT
GCCACCAGTT CCGCCACCGA TGGCCTGTAT CTGGAAATGC AGCCCATCAT GTCACTCACA
AAGCCGTATG AATCGCTTAA CTTTGAGGTG CTGCTGCGCA TGCGCGACAT CGATGGCAAT
GTCGTTCCCA CCGACCGGCT GATTGCTGCA GCCGAGAACA GCGGACGCAT GGGCATGATT
GACCGCTGGG TCTTGTCCAC CACGCTGGCC TGGCTCAACA CCAATTACAC GCAACTGAAG
CACACGAAAT TCGTCTGCAT GAATTTGAGC GGTGCTTCAC TGAATGATGA GAAGTTCCTG
CAGGAGGTGT ATGTCATGCT TGAACAAAAC CTGCATCTGG TTGGGCAACT GTGCCTTGAA
ATCACCGAAA GCGTGGCCTT GCACGATCTG GAAAATACCC GCCGCTTCGT CAACAAGGTG
CGCGGCTACG GTGCCAAAGT GGCGCTGGAC GACTTCGGCG CCGGTTACAC CTCATTCTCT
TACTTGAAGG AGTTCACGGC AGACCTGCTG AAAATCGATG GCAGCTTCAT TGTCAACATG
AACAAGCACC CAGCCAACAT CGCCATTGTC GAAGCTATCG TTAACCTCGC CAAAAACCTG
GGCATGAAGG TGATTGCCGA GTGGGCCGAG GACAATGCCA CGGTGCAGAC CCTGACCGAG
ATCGGGGTTG ATTATGTGCA GGGATTTGCC GTGGCACGAG CCCAGCACCC TGACAGACTG
CTCAAAGCCG AGTCTTCGGC AAGCTTTATT CAGGACGAAG CGCTGGCCCA ATATGTGTGC
TTGATTCAAA AGTCAAACCA GATGCTGCCG CAAGTGGATA TGTTTTCCGA CGTGCGCGTC
ATCAACATGC ATTGA
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| Protein sequence | MDNLNQGLDR LLYALSTYAL PFFIGLMSLL ALFAWKTQYP AADPQQLQIR VIKESAAVAG
PAQALAQLRE SSISQFHDTR LSEVPVWLTF VVPEDVEHTP MMVEFPSRHA MDIACWDART
LKALGTGNHQ GTTGGITAIK AGFALELSPA LKDEQVVCRT SAIGPARLSA LIWRANNLQT
SAQEFHRKSG LLDGGIIVLA IFVLVTALIN RNRLYVLFAA WLVINLRMGA LSAGWDTQWL
GYTVPYDWLL QGRMITITLY YVLTLILFTS LFRDDLLHVG HEWLVRVFQW TCFPLLILSS
FLPSSSYLPL FWPVVGAGIS MLAYLLVRIL RKTRSRVAMW YGAAISITLV ASFYEVLSAA
LGIKGLIGSV NSVTAALVSS LLAALAIAEQ MRHEHVQRLE VQAKLEHTYA AMPIGLFTLD
LRGRFTSANP ALVGMLGPNV LTDGANAWQQ YFTNGAWTQL HQMVHNKSED EMEIQGKPVP
GYSGSKCFLV KATLAGDKIE GSLQDVTEKS RATADLYFLA DHDSLTKVLN RRGIAKAFNS
AIASLTDRNA PVALAYLDLD RFKLINDLFG HGVGDEVLQQ VCGRVSDLLS RELQFGRVGG
DEFVIVFPDT PIARAAVMCR GIIDSIDTLP YHVGENAFHV RGSIGLIEVR AGMQFNDAMS
TADRACRQAK SGSSGGLVVY EKNAIAFKKH EAELKLIALL ATSSATDGLY LEMQPIMSLT
KPYESLNFEV LLRMRDIDGN VVPTDRLIAA AENSGRMGMI DRWVLSTTLA WLNTNYTQLK
HTKFVCMNLS GASLNDEKFL QEVYVMLEQN LHLVGQLCLE ITESVALHDL ENTRRFVNKV
RGYGAKVALD DFGAGYTSFS YLKEFTADLL KIDGSFIVNM NKHPANIAIV EAIVNLAKNL
GMKVIAEWAE DNATVQTLTE IGVDYVQGFA VARAQHPDRL LKAESSASFI QDEALAQYVC
LIQKSNQMLP QVDMFSDVRV INMH
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