Gene Rfer_2418 details

Gene Information

• Locus tag: Rfer_2418
• ID: 3961245
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 2662350
• End bp: 2664200
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637917236
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_523666
• Protein GI: 89901195
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGACAAGA AAAATACCTG GAATGTGGGT TACTGGTTGA TTGCGCTGAT GCTGCTGCTG 
TTGCTGCAAA ACTTCTGGCA AAGCGCCAGC CAGGTGCAGA CCGTGCCCTA CAGCGAGTTC 
GAAAAGGCGC TCACCGAAGA ACGCATCGCC GACGTCACGA TTTCCGAGCG CACGGTGATC 
GGTCGGCTGA AAACACCGGA GGGCAACAAG ACGACGCTGG CGGCGGTGCG GGTCGAGCCC 
GAGTTGGCGG CGCGCCTGGA AAAATACAAG GTGCCCTACA GCCGGACTGT GGACAACACA 
TTTTTGCGCG ACCTGCTGTC GTGGATCGTG CCGGCCCTGG TGTTCTTTGG GCTGTGGTTC 
TTTTTGTTTC GCAGCTTTGC CAACAAGCAG GGCATGGGTG GCTTTTTGTC GGTTGGCAAG 
AGTCGCGCCA AAATTTACAT GCAGACCAAC ACCGGCATCA CCTTTGCCGA CGTCGCCGGG 
GTGGACGAGG CTCGTCACGA ACTCGAAGAG GTGGTTGATT TCCTCAAGCA TCCGCAGGAG 
TATGGACGCC TGGGCGCGCA CATCCCCAAA GGCGTGTTGC TGGTGGGCCC GCCCGGCACC 
GGCAAGACCT TGTTGGCCAA GGCCGTGGCG GGCGAAGCGG GCGTGCCTTT CTTCTCGATC 
TCGGGCAGCG AATTTGTCGA GATGTTTGTC GGCGTGGGCG CGGCCCGGGT GCGCGATCTG 
TTTGAACAAG CGCGCGCCAT GGCCCCTGCC ATCATCTTCA TTGACGAGCT TGACGCGCTG 
GGCCGCGCCC GTGGCGCCTT TCCCGGCCTG GGTGGCCATG ACGAGAAAGA ACAGACCCTG 
AACCAGTTGC TCTCGGAAAT GGATGGTTTT GACTCGTCCG TGGGCCTGAT CATTCTGTCG 
GCCACCAACC GGCCCGAGAT CCTGGATTCG GCGCTCTTAC GGGCCGGTCG ATTTGACCGC 
CAGGTGCTGG TCGACCGGCC CGACCGCAAA GGCCGCATTG ACATCCTCAA GGTGCATGTG 
CGCAAGACCA CACTCGACGC CGCATTGAAA CTTGAAGACG TGGCGGCGCT GACCCCAGGC 
TTCACTGGGG CCGACCTGGC CAACCTGGTC AACGAGGCGA CGCTGGTCGC CACCCGGCGC 
AAGGCGGATC AGGTGAGCTT GCCTGATTTC ACAGCGGCGG TGGAGCGCAT TGTGGCGGGC 
CTGGAGCGCC GCAGCCGCGT GCTCAACCCG AAAGAGCGCG AGGCGGTGGC CTTCCACGAG 
ATGGGCCATG CCCTGGTCGC GCTGGCGCAA ACCGGCACCG ACCCGGTGCA CAAGGTGTCT 
ATCATCCCGC GCGGCATTGG CGCATTGGGC TACACCATTC AGCGCCCAAC CGAAGACCGC 
TACCTGATGA CGCGTCCCGA GCTGGAGCAA AAAGTCTCGG TGCTGCTGGC CGGGCGGGCC 
GCCGAGAAAC TGGTGTTTGG CGTGCTGTCC ACCGGTGCGG CCGATGATCT GGCCAAAGCC 
AGCGACATCG CCCATGACAT GGTCACCCGT TATGGCATGG ATGAGGACCT GGGTTTTGTG 
GCCTTTGAGC CGCAGCGCCA GCAGCAAATG CTTGATCTGC CGCCCGGCCT CTTGCCGCAA 
GGTGCGCGCC TGTCGGAAGA AACTCAACGC CATATCGACG CGGCGATTCG CAGCATCGTG 
ATGGACGGCT TTGAGCATGC CACGGTCATC CTGAGCGCCA ACAGCGACGT GCTGGAACGC 
GGCGCGCGTG CGCTGCTTGA GAAAGAAACG CTGGATGAGG ACGCCATCCG CGCCCTGGCG 
CAGGACCTGC GGCGAGTCGA CCCGGACGCA CCTAGGGGGA GCGAGTCGTG A 

 

Protein sequence

MDKKNTWNVG YWLIALMLLL LLQNFWQSAS QVQTVPYSEF EKALTEERIA DVTISERTVI 
GRLKTPEGNK TTLAAVRVEP ELAARLEKYK VPYSRTVDNT FLRDLLSWIV PALVFFGLWF 
FLFRSFANKQ GMGGFLSVGK SRAKIYMQTN TGITFADVAG VDEARHELEE VVDFLKHPQE 
YGRLGAHIPK GVLLVGPPGT GKTLLAKAVA GEAGVPFFSI SGSEFVEMFV GVGAARVRDL 
FEQARAMAPA IIFIDELDAL GRARGAFPGL GGHDEKEQTL NQLLSEMDGF DSSVGLIILS 
ATNRPEILDS ALLRAGRFDR QVLVDRPDRK GRIDILKVHV RKTTLDAALK LEDVAALTPG 
FTGADLANLV NEATLVATRR KADQVSLPDF TAAVERIVAG LERRSRVLNP KEREAVAFHE 
MGHALVALAQ TGTDPVHKVS IIPRGIGALG YTIQRPTEDR YLMTRPELEQ KVSVLLAGRA 
AEKLVFGVLS TGAADDLAKA SDIAHDMVTR YGMDEDLGFV AFEPQRQQQM LDLPPGLLPQ 
GARLSEETQR HIDAAIRSIV MDGFEHATVI LSANSDVLER GARALLEKET LDEDAIRALA 
QDLRRVDPDA PRGSES