| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2065 |
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| Symbol | |
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| ID | 3962112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2236324 |
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| End bp | 2239482 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637916885 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_523321 |
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| Protein GI | 89900850 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAAT TTTTTATCGA ACGCCCCATC TTTGCGTGGG TGATTGCCAT TTTCATCATG
GTGCTTGGCG GCGTGTCCAT CAAGCAGTTG CCGATTGCAC AGTACCCCAC GGTAGCCCCG
CCGACCATTC AGATATCCGC CGCCTATCCC GGTGCCACGG CGCAGACGCT GGAAGACAGC
GTGCTAGCCG TCATCGAACG TGAAATGAAC GGCGCTACCG GACTGGCCTA CATGGAATCG
ACTAGCCAGG CCAACGGCAC CGGCTCCATC TCACTGAGTT TTGAGCCCGG AACTGACCCG
GCCTTGGCGC AAGTTGACGT GCAAAACCGA CTGGCGCGCG CCACACCGCG ACTGCCGACC
ATCGTGAACC AGCAGGGCGT GCGCGTCGAG AAATCACGCG CCAACTTTTT GTTGTTCACG
ATGTTGTCGT CCAAGAACCC CGACGTGACC CTGGACATGC TCAATGACTA CGCGGCTCGC
AACGTGTTGC CTGAGCTCCA GCGGATCACA GGCGTTGGCA CGGTCACGCA ATTCGGTTCG
GAACGCGCCA TGCGCATCTG GATTGATCCG AGCAAGCTCA GGGGATTCAA TCTGTCGCTG
GACCAGGTGA ATGCGGCCAT CCGTGCACAA AACGCGCAAA TATCAGCGGG TAATCTTGGT
GACCTGCCCA GCGCACCAGG CCAGACCATG AACGCGACCA TCGTCGTACC GGGACAGCTG
TCCTCGGTGG AGTCGTTTGG CAAGATCGTG CTGCGCGCCA ATACCGACGG CTCCACGGTT
CGACTCAAGG ATGTCGCCCG CATCGAACTG GGCGCCCAGA GCTACAGCAC CAGCGCGCGA
TTGAATGGCC AACCGGCTGT CGGCCTGGGC GTACAACTCA CCCCCACGGC CAATGCACTG
GCGACAGCAA AAGCGGTCAA GGTCAAGCTG GCCGAATTGC AGCCCTTGTT CCCGCAGGGG
GTGAGCTACA CCATCCCTTA TGACACTTCC ATTTTCATCT CGGCGTCGAT CGGAAAAGTG
GTTGAAACCC TGCTGGAAGC CATGTTGCTG GTGTTCCTGG TGATGTTCCT GTTTCTGCAG
AACATTCGCT ACACCATCAT TCCGACCATC GTGGTGCCGG TGGCGCTGCT GGGAACCTTT
GGCGCCTTGC TGGCCATGGG TTTCTCGATC AATGTTTTGA CCATGTTCGG CATGGTGCTC
GTTGTCGGCA TTGTGGTCGA TGATGCGATC GTGGTGGTGG AGAACGTGGA GCGCATCATG
AGCGAAGAAG GCCTGCCCCC GTTGCAGGCC GCGCGCAAGG CCATGGGTCA GATATCGGGT
GCCATCATTG GCATCACCGT GGTGCTGATT TCGGTATTTG TCCCGCTGGC CTTCTTTGCG
GGCTCAACGG GCAACATCTA CCGCCAGTTT TCCGCCACGA TGGCCACCTC GATCGCCTTT
TCGGCCTTTC TGGCCCTGTC ACTGACCCCA GCGCTATGCG CCACGCTGCT GAAACCCGTC
GAGGCCGGAC ACCACCTGGA AAAAGGCGGT TTCTTTGGCT GGTTCAACCG CGGCTTCAAA
TCTACCGCCA AGAACTATGA AGGCGGTTTG GCCAAGCTAC TCAAGCGTGC CGGCCGGATG
ATGATCGTCT ACGTCATGCT GATTGGCGTG GTCGGGCTGA TTTACATGCG CCTGCCAACC
TCGTTCCTGC CCAATGAAGA TCAGGGCTAC ATCGTTACCA ACGTGCAATT GCCCGCCGGC
GCAACGCTTG AGCGCACTCG CTCGGTGCTC ACGCAAGTCG AAGGCTACAT GCTCAAGCAA
CCTGAGATCG CCAACATTGT CACCGTGGCC GGCTTCTCAT TTTCAGGTCA GGGACAAAAT
GCCGGACTGG CGTTTGTGAT TCTCAAGGAT TGGAGTGAAC GTGCGGGTCC GGAGCATTCG
GCGCAAGCGG TCGCTGGGCG CGCATTTGGC GCCCTGATGG CGGTCCGTGA TGCCTTCATC
TTCGCACTGA GCCCGCCTCC CATTCCCGAG CTCGGCAATG CCACCGGCTT TACCTTCCGC
TTGCAGGACC GCGGTAGCAA AGGACACGTC GCGCTGCTCA ACGCACGCAA TATGTTGCTG
GGCATGGCGA GCCAAAGCAA AGTCCTCGCT GGCGTGCGAC CTGACGGCTT GGAAGACGCG
CCCCAGATGC AAATTGACAT CGACCGCGAC AAGGCCAGTG CGCTGGGCGT GGGGTTTGAC
AGCATCAACA GCGCTTTGTC AACAGCACTC GGTTCGGCCT ATGTCAACGA CTTCCCGAAC
GAAGGTCGGT TGCAACGCGT GGTCGTTCAG GTCGATGCCA GCGCACGGAT GCAACCAGAA
AAAGTACTGG ACTTGCCCGT GCTCAACAGC AGCAATCAGA TCGTGCCGCT CTCGGCTTTC
GCCAGCACGC GCTGGGTCAA CGGCCCGATG CAAACCGTTC GCTACAACGG CTATCCAGCC
ATGAAAATTG CCGGCGATGC CGGGCCCGGT TTCAGTACCG GGGACGCCAT GGCCGAAATG
GAAAAACTGG CCGCCAGACT TCCTGAAGGC TTCGGCTTCG AATGGACCGG CCAGTCACGC
GAAGAAAAGC TTGCAGGCGC GCAGGCCATG GTCCTGTACG GCTTCGCGCT GCTGGCGGTG
CTCCTGAGTC TGGCAGCGCT GTATGAGAGC TGGTCGATCC CGTTATCGGT GCTGCTGGTG
GTGCCGCTGG GCGTGCTCGG CGTGGTGCTG GCAACCCTGT TGCGCGGCCT GTCCAACGAC
GTGTACTTCC AGATCGGTTT GATCACCATC ATCGGTCTGT CCTCCAAGAA CGCGATTCTG
ATCATCGAAT TTGCCAAGGA CCTGCAGGCC GAAGGCAAAA GCGTCATGGA ATCTGCGCTC
GGAGCAGCCC ACCTGCGCTT TCGCCCCATC ATCATGACCT CCACAGCGTT CACGCTGGGT
GTGCTGCCGC TGTTCCTCTC AACCGGCGCC AGCTCCGCCA GTCAGCGCGC CATTGGCACC
GGCGTGATTG GCGGCATGCT CACCGGCACG GTGCTGGCCG TCATTTTCGT GCCCGCCTTC
TTTTTGCTGG TTCGCACCTT CTTCAAAGGC AGCCAGCGTC AGCACGAAAG AGATCTCAAA
GCGGCTCATC TGCACCACCA AGAGGCCGGA AATGAATAA
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| Protein sequence | MAKFFIERPI FAWVIAIFIM VLGGVSIKQL PIAQYPTVAP PTIQISAAYP GATAQTLEDS
VLAVIEREMN GATGLAYMES TSQANGTGSI SLSFEPGTDP ALAQVDVQNR LARATPRLPT
IVNQQGVRVE KSRANFLLFT MLSSKNPDVT LDMLNDYAAR NVLPELQRIT GVGTVTQFGS
ERAMRIWIDP SKLRGFNLSL DQVNAAIRAQ NAQISAGNLG DLPSAPGQTM NATIVVPGQL
SSVESFGKIV LRANTDGSTV RLKDVARIEL GAQSYSTSAR LNGQPAVGLG VQLTPTANAL
ATAKAVKVKL AELQPLFPQG VSYTIPYDTS IFISASIGKV VETLLEAMLL VFLVMFLFLQ
NIRYTIIPTI VVPVALLGTF GALLAMGFSI NVLTMFGMVL VVGIVVDDAI VVVENVERIM
SEEGLPPLQA ARKAMGQISG AIIGITVVLI SVFVPLAFFA GSTGNIYRQF SATMATSIAF
SAFLALSLTP ALCATLLKPV EAGHHLEKGG FFGWFNRGFK STAKNYEGGL AKLLKRAGRM
MIVYVMLIGV VGLIYMRLPT SFLPNEDQGY IVTNVQLPAG ATLERTRSVL TQVEGYMLKQ
PEIANIVTVA GFSFSGQGQN AGLAFVILKD WSERAGPEHS AQAVAGRAFG ALMAVRDAFI
FALSPPPIPE LGNATGFTFR LQDRGSKGHV ALLNARNMLL GMASQSKVLA GVRPDGLEDA
PQMQIDIDRD KASALGVGFD SINSALSTAL GSAYVNDFPN EGRLQRVVVQ VDASARMQPE
KVLDLPVLNS SNQIVPLSAF ASTRWVNGPM QTVRYNGYPA MKIAGDAGPG FSTGDAMAEM
EKLAARLPEG FGFEWTGQSR EEKLAGAQAM VLYGFALLAV LLSLAALYES WSIPLSVLLV
VPLGVLGVVL ATLLRGLSND VYFQIGLITI IGLSSKNAIL IIEFAKDLQA EGKSVMESAL
GAAHLRFRPI IMTSTAFTLG VLPLFLSTGA SSASQRAIGT GVIGGMLTGT VLAVIFVPAF
FLLVRTFFKG SQRQHERDLK AAHLHHQEAG NE
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