| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2044 |
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| Symbol | |
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| ID | 3963182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2211926 |
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| End bp | 2213101 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637916864 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_523300 |
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| Protein GI | 89900829 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.398089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAA CTCTGCACCT GGCCGAACAA CTGATCGCCC GCCCCTCGCT CACGCCCGAT
GATGCCGGCT GCCAGCAAAT CATCGCTGAA CGACTCGCCC CGCTGGGCTT TAGCTGTGAA
ACCATCACCA GCGGCCCGGC TGATTTCCGC GTCACCAATT TGTGGGCAAA ACGGGCTGCA
GCCCCCGTCA AATCTGCGCA ACACACTACC AAATTAGTAG TTTTTGCCGG CCACACCGAC
ATCGTGCCCA GCGGCCCGGT GCAGCAATGG CGCTGCCATC CGTTCACACC CACCCAGTTC
GATGGCAAGT TGTACGGTCG CGGCGCGGCC GACATGAAAA CCTCGCTGGC GGCGTTCGTC
GTCGCGGTTG AAGAGTTTTT GACGGCCCAG CCGGACACGG CTTTGGCCAT CGGTTTTTTG
CTCACCAGCG ACGAAGAAGG CCCGGCGCTG GATGGCACGG TCAAAGTCTG TGAAGCGCTG
CAGGCGCGCG GCGAACGCAT CGATTACTGC ATCGTCGGTG AGCCCACCTC CCTGGAGCGC
ACCGGCGACA TGATCAAAAA CGGCCGCCGC GGCACGCTCA GCGCCCGCTT GACCGTCAAA
GGTGTGCAAG GCCATATCGC CTACCCGCAC CTGGCCAAAA ACCCGATTCA TCTGGTCGCA
CCCGCGCTGG CCGAGTTGGT GGGCGTCGAA TGGGACCGGG GCAACGCGTT CTTCCCGCCC
ACCTCCTGGC AGATCAGCAA CATCCACAGC GGCACCGGCG CCAGCAATGT GATTCCGGGC
GCGGTGGTGA TTGACTTCAA CTTCCGCTTT TCCACCGAGT CCACACCCGA GTCGCTGCAG
ACCCGGCTGG CTGCGGTGCT GGAGCGCCAC GAGCTCGACT ACGAGCTGGC GTGGACGCTC
GGTGGCACGC CGTTCCTGAC CGAGCCCGGC ACACTGGTCG ACGCGGTGGT GGACGCGATC
AAACAAGAGA CCGGCCTGAC CACCGTTCTC TCCACCACCG GGGGCACCAG CGACGGCCGT
TTTATTGCCA GAATTTGCCC CCAGGTCATC GAGTTCGGCC CGCCCAATGC CAGCATCCAC
AAGATCGACG AACACATCAA CGTTGCCGAT ATCGAGCCTT TGACAAACAT CTACCGGCGC
GTGCTGGAGA ACCTGAGTGC GGGGCTGAGC GCATGA
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| Protein sequence | MPKTLHLAEQ LIARPSLTPD DAGCQQIIAE RLAPLGFSCE TITSGPADFR VTNLWAKRAA
APVKSAQHTT KLVVFAGHTD IVPSGPVQQW RCHPFTPTQF DGKLYGRGAA DMKTSLAAFV
VAVEEFLTAQ PDTALAIGFL LTSDEEGPAL DGTVKVCEAL QARGERIDYC IVGEPTSLER
TGDMIKNGRR GTLSARLTVK GVQGHIAYPH LAKNPIHLVA PALAELVGVE WDRGNAFFPP
TSWQISNIHS GTGASNVIPG AVVIDFNFRF STESTPESLQ TRLAAVLERH ELDYELAWTL
GGTPFLTEPG TLVDAVVDAI KQETGLTTVL STTGGTSDGR FIARICPQVI EFGPPNASIH
KIDEHINVAD IEPLTNIYRR VLENLSAGLS A
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