| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1792 |
|---|
| Symbol | |
|---|
| ID | 3963312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1929673 |
|---|
| End bp | 1930812 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916615 |
|---|
| Product | aspartate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_523052 |
|---|
| Protein GI | 89900581 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0136] Aspartate-semialdehyde dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01745] aspartate-semialdehyde dehydrogenase, gamma-proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.149312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA TTGGCAATCT GGTCGGCATG GTAGGCTGGC GCGGCATGGT GGGTTCCGTA
TTGATGGACC GCATGCAGAC CGAAGGCGAT TTCGATCTGA TCGAACCGGT CTTCTTTTCA
ACCTCCAATG CCGGTGGACA GGCCCCGGCT TTGGCTAAAA ACGAAACCAC CCTCCAAGAT
GCTTTTGACA TTGAAGCGCT GAAAAAGTGC GACATCATCA TCAGTGCACA AGGGGGCGAC
TACACCACTG AGGTTTTTCC TAAACTGCGT GCTGCAGGAT GGTCGGGCCA CTGGATTGAT
GCCGCGTCAA CTCTGCGCAT GAAAGATGAT GCCATCATCA TCCTGGATCC GGTCAACCTG
CCCGTGATCC AGAATGCCCT CACCAAGGGT GGGAACAACT GGATTGGCGG CAACTGCACC
GTGAGCTGCA TGTTGATGGG GGTTGGCGCG CTGTACAAGG CGGGCTTGGT CGAGTGGATG
ACCAGCATGA CGTACCAGGC GGCATCCGGC GGCGGCGCGC AGCACATGCG TGAGTTGTTG
ACCCAATTCG GCACCCTGAA CGCGGAGGTC AAAGACATGC TGGACGACCC CAAGTCCGCC
ATTCTGGAAA TAGATCGCAG GGTCCTGCAC AAACAGCAGT CCTTGACGAG CGCCGAGACG
GCCAATTTCG GCGTGCCGCT GGGCGGCAGC CTGATCCCCT GGATCGACAA GGATCTCGGC
AACGGCATGA GCCGCGAAGA ATGGAAGGGC GGCGCCGAGA CCAACAAGAT TCTGGGCCAG
GGCGCCGCTT TTGGCACGGC TGAGACCCCG GTTGACGGTT TTTGCGTGCG CGTGGGCGCC
ATGCGCTGCC ACAGCCAGGC CTTGACCTTC AAGCTCAAAA AAGATGTGCC TGCCGCCGAC
ATTGAAGCCA TGATCGCGGC GGATAACGAC TGGGTCAAAG TCGTGCCCAA CACGCGCGAA
GCAAGTGTGC AACACCTGAC ACCGGTGGCC GTCACCGGCA CACTGGGTAT CCCGGTTGGG
CGCATCCGAA AACTCGCCAT GGGTCCGCAA TATGTGGGTG CGTTCACCAT TGGTGACCAG
TTGCTATGGG GCGCCGCAGA GCCCCTGCGC CGCATGCTGC GTATTTTGCT GGCCGCCTAA
|
|---|
| Protein sequence | MMKIGNLVGM VGWRGMVGSV LMDRMQTEGD FDLIEPVFFS TSNAGGQAPA LAKNETTLQD
AFDIEALKKC DIIISAQGGD YTTEVFPKLR AAGWSGHWID AASTLRMKDD AIIILDPVNL
PVIQNALTKG GNNWIGGNCT VSCMLMGVGA LYKAGLVEWM TSMTYQAASG GGAQHMRELL
TQFGTLNAEV KDMLDDPKSA ILEIDRRVLH KQQSLTSAET ANFGVPLGGS LIPWIDKDLG
NGMSREEWKG GAETNKILGQ GAAFGTAETP VDGFCVRVGA MRCHSQALTF KLKKDVPAAD
IEAMIAADND WVKVVPNTRE ASVQHLTPVA VTGTLGIPVG RIRKLAMGPQ YVGAFTIGDQ
LLWGAAEPLR RMLRILLAA
|
|---|
| |