| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1580 |
|---|
| Symbol | |
|---|
| ID | 3960917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1710885 |
|---|
| End bp | 1711937 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916404 |
|---|
| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
|---|
| Protein accession | YP_522843 |
|---|
| Protein GI | 89900372 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.11671 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTG GCCCGTATTT ATTGCCCAAT CGGTTCTTTG TCGCCCCCAT GGCTGGGGTG
ACAGACCGAC CCTTTCGTCA GTTGTGCCGA CGGCTGGGGG CGGGCTATGC GGTCAGCGAG
ATGCTCACCA GCCGACCCGA TTTGTGGCAC ACGCCGCAAA CCGCGCGGCG TGCCAACCAT
GACGGTGAAG CCGGTCCGAT TGCGGTGCAA ATCGCCGGCA CAGAAGCCGC CATGATGGCG
CAGGCCGCTG CCTACAACAT CGACTGCGGC GCCCAGATCA TTGACATCAA CATGGGTTGC
CCGGCCAAAA AAGTCTGCAG CAAGTGGGCC GGTTCGGCCC TGATGCAAAA CGAGCCGCTG
GCGCTGTCCA TCATTGAGGC CGTGGTAGCA GTCTGCACGC CACGCGGGGT GCCGGTCACG
CTCAAAATGC GCACCGGCTG GTGTCAGTCG CACAAAAACG CGGTGGCGCT GGCGCGCGCG
GCTGAGGGCG CCGGTGTGCA GATGATCACG GTGCACGGCC GCACGCGGGA ACAGGGTTAC
AGCGGGACGG CCGAGTACGA CACCATTGCC GCGGTCAAGG CGGCGATCAA AGTGCCGGTG
GTGGCCAATG GCGACATTGA CTCGCCCGAG CAAGCCCGCC ACGTGCTCGC GGTGACCCGG
GCCGATGCGG TCATGGTGGG TCGCGCGGCG CAGGGGCGGC CCTGGATCTT TCGGGAAATG
GCGCACTTTT TGGCCACTGG CAGTCATCTC GCGCCGCCTC TGGTGGCCGA GGTCAAGCAA
CTGCTGATCG ACCATTTGTA CGACCATTAC GCGCTGTATG GCGACTTTCT CGGTGTGCGC
ACCGCGCGCA AGCACATTGG CTGGTACGTC AAGAACCTGC CCGGTGGTGA TGCGTTTAGG
GCGCGCATGA ATTTGATGGA AGACTGTGGC CAGCAGGCCG CAGCGGTTGC CGATTTTTTT
GACGTTTTGA ATGCGCGCAT GGACCGGCTG CCGGTGAACG TGCCGCCTGG GGTATTGAAA
AAGAATGAAA AACACATGGA GACAACACGA TGA
|
|---|
| Protein sequence | MNIGPYLLPN RFFVAPMAGV TDRPFRQLCR RLGAGYAVSE MLTSRPDLWH TPQTARRANH
DGEAGPIAVQ IAGTEAAMMA QAAAYNIDCG AQIIDINMGC PAKKVCSKWA GSALMQNEPL
ALSIIEAVVA VCTPRGVPVT LKMRTGWCQS HKNAVALARA AEGAGVQMIT VHGRTREQGY
SGTAEYDTIA AVKAAIKVPV VANGDIDSPE QARHVLAVTR ADAVMVGRAA QGRPWIFREM
AHFLATGSHL APPLVAEVKQ LLIDHLYDHY ALYGDFLGVR TARKHIGWYV KNLPGGDAFR
ARMNLMEDCG QQAAAVADFF DVLNARMDRL PVNVPPGVLK KNEKHMETTR
|
|---|
| |