| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1489 |
|---|
| Symbol | |
|---|
| ID | 3960930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1602173 |
|---|
| End bp | 1604293 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637916308 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_522753 |
|---|
| Protein GI | 89900282 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.622753 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATAT TCAACAAAGT CACCAAGACC TTCCAATGGG GCCAGAACAC CGTCACCATG
GAAACCGGCG AAATCGCCCG TCAAGCCAGC GGCGCCGTAT TGCTGGACAT GGATGGCACC
GTGGTGCTGG CCACTGTGGT TGCCAAGACC GAAGGCAAAG CCGGTCAGGA CTTCTTCCCC
TTGACCGTGG ACTATCTCGA GAAAACCTAT GCTGCAGGCA AGATTCCGGG CAGCTTCTTC
AAGCGTGAAG GCCGTCCCAG CGAGTTTGAA ACGCTGACCA GCCGCCTGAT TGACCGTCCG
ATCCGCCCGT TGTTCCCGGA AGGCTTCTTC AACGAAGTGC ATGTCGTTGT TCATACGCTG
TCCTTGAACC CTGAAGTGGA CGCGGACATT GCGGCCTTGA TCGCGGTCAG CGCTGCGCTG
TCCGTCAGCG GCATCCCGTT CAGCGGCCCT ATCGGCGCAG CTCGCGTGGG CTACATCAAC
GGTGAATACG TGCTCAATCC GGGCCAGACT GCCCGCAAAG ATTCCGTCAT GGATCTGGTG
GTGGCCGGTA CCGAAGCCGC TGTGCTGATG GTCGAATCCG AAGCCCAGCA ACTGAGCGAA
GAAATCATGC TCGGCGCTGT CGTGTTCGGT CATGAGCAGG GAAATATCGC CATCAACGCG
ATTCACGAGC TGGTGCGTGA CGCCGGCAAG CCGGTGTGGG ACTGGAAGGC GCCGGCCAAG
GACGAGCCAT TGATCGCCAA GGTCGGCGCA TTGGCCGCCC ATAAACTGGA GGCGGCTTAC
CAAATTCGCA ACAAGCAGGC CCGTACCCGC GCCTGCCGCG AAGCTTACGC TGTCGTGATG
GCAGACCTGA AGCTCGATGG TGTCGCGTTT GACAGTGTTG CCGTTGAAGG CATGCTGTTT
GACATCGAAG CCAAGATCGT TCGCAGCCAG ATTCTGGCCG GCGAGCCGCG CATTGACGGC
CGCGACACCC GTACCGTGCG TCCGATCGAA ATCCGCAACA GCGTGCTGCC CCGCACCCAC
GGTTCTGCCC TGTTCACGCG CGGTGAAACC CAGGCCTTGG TGGTCACCAC CCTGGGCACC
GAGCGTGATG CCCAGCGCAT TGACGCGCTG TCTGGCGACT ATGAAGATCG CTTCATGCTG
CACTACAACA TGCCCCCCTT TGCCACTGGC GAAACCGGTC GCGTCGGTAC GCCCAAGCGG
CGTGAAATCG GCCACGGACG CCTGGCCAAG CGGGCTTTGA TGGCGGTGTT GCCAAGCAAG
GAAGAGTTCC CGTACACCAT GCGTGTGGTC TCGGAGATCA CCGAGTCCAA TGGCTCTTCG
TCCATGGCCT CGGTCTGCGG CGGCTGCCTC TCCCTGATGG ATGCCGGCGT GCCCATGAAG
GCGCATGTGG CCGGCATTGC CATGGGTCTG ATCAAGGAAG AAAACCGTTT CGCCGTGCTG
ACCGACATTC TGGGTGATGA AGATCATCTG GGTGACATGG ACTTCAAGGT AGCGGGTACC
ACCAACGGCA TTACCGCGCT GCAGATGGAC ATCAAGATTC AGGGCATTAC CAAGGAAATC
ATGCAAGTGG CACTGGCCCA GGCCAAGGAA GCGCGCATGC ACATCCTGGG CAAGATGCAG
GAAGCCATGG CTGAGGCCAA GACCGAAGTG TCGACCTTTG CGCCGCGCCT GTTCACCATG
AAGATCAATC CCGACAAGAT TCGTGACGTG ATCGGCAAGG GCGGCTCCGT CATCCGTGCG
CTGACCGAAG AGACCGGCAC CCAGATCAAT ATCGACGAAG ACGGCACCAT CACCATCGCG
TCGGCTGATC CGGCCAAGGC TGAAGAAGCC AAACGCCGCA TTCAGCAGAT CACGGCTGAA
GTCGAAATCG GCAAGATCTA TGAAGGCCCG ATCACCAAGA TTCTGGACTT CGGTGCCTTG
GTGAATCTGC TGCCGGGCAA AGACGGCCTG CTGCACATCA GCCAGATCGC GCACGAACGT
GTTGAAAAGG TGACCGACTA TTTGTCAGAG GGCCAGATCG TCAAAGTCAA GGTGATGGAG
ACGGACGAAA AGGGCCGCAT CAAGCTGTCC ATGAAAGTGT TGCTGGATCG TCCGGGCCAG
GGCGGCCCTG AGCACGTTTG A
|
|---|
| Protein sequence | MSIFNKVTKT FQWGQNTVTM ETGEIARQAS GAVLLDMDGT VVLATVVAKT EGKAGQDFFP
LTVDYLEKTY AAGKIPGSFF KREGRPSEFE TLTSRLIDRP IRPLFPEGFF NEVHVVVHTL
SLNPEVDADI AALIAVSAAL SVSGIPFSGP IGAARVGYIN GEYVLNPGQT ARKDSVMDLV
VAGTEAAVLM VESEAQQLSE EIMLGAVVFG HEQGNIAINA IHELVRDAGK PVWDWKAPAK
DEPLIAKVGA LAAHKLEAAY QIRNKQARTR ACREAYAVVM ADLKLDGVAF DSVAVEGMLF
DIEAKIVRSQ ILAGEPRIDG RDTRTVRPIE IRNSVLPRTH GSALFTRGET QALVVTTLGT
ERDAQRIDAL SGDYEDRFML HYNMPPFATG ETGRVGTPKR REIGHGRLAK RALMAVLPSK
EEFPYTMRVV SEITESNGSS SMASVCGGCL SLMDAGVPMK AHVAGIAMGL IKEENRFAVL
TDILGDEDHL GDMDFKVAGT TNGITALQMD IKIQGITKEI MQVALAQAKE ARMHILGKMQ
EAMAEAKTEV STFAPRLFTM KINPDKIRDV IGKGGSVIRA LTEETGTQIN IDEDGTITIA
SADPAKAEEA KRRIQQITAE VEIGKIYEGP ITKILDFGAL VNLLPGKDGL LHISQIAHER
VEKVTDYLSE GQIVKVKVME TDEKGRIKLS MKVLLDRPGQ GGPEHV
|
|---|
| |