| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1484 |
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| Symbol | |
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| ID | 3960925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 1596298 |
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| End bp | 1597344 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637916303 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_522748 |
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| Protein GI | 89900277 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0875389 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCCTC CTGTATTTTC CGCCTGCTTA CCCCGCGCTG ATCGCCGTCA GTGGCTGCGC
GGGCTGGCCG CCACCGCGCT GGCATCGGGC GCCCTGAAGG CGGCACCAGC CCATGGCATC
ATGCTGCGGT TTTCGCACGT GGTGGCTGAG GAAACGCCTA AAGGGTTGGC GGCCAACCGC
TTCAAGCTGC TGCTGGAGCA GCGCTCTGGC GGACGCATTC AGGTAGTGAT CTACCCCGAT
GCTCAGCTCT ACGGCGACCA CGACGAGATG CAGGCCTTGC AACTCGGTGC GGTGGACTTG
CTGGCCCCCT CGCTGTCCAA GTTTGGCCGC ATCGGTTTCC CGGAATTCGA GCTGTTTGAC
TTGCCGTTCC TGTTTGACGA AGTGGCTGAT GTGCGGCGGA TCACCCAAGG TCCGCTTGGG
AAACGGTTGC TGGCGCGTCT AAGCCAACAG GGCCTGGTGG GTCTGGGTTA CTTTGACAAC
GGCTTCAAGC AAATGAGCGC CAACCGCCCC TTGCTGGCTC CGGCCGATTT TGTCGGTTTG
CGCATGCGCG TGCAGGCCTC GCGCGTGATT GCAGCACAGA TGCGTGCCCT GGGCGCGCAT
CCGGTCACGC TCCCGTTCAG TGAAACCCGG CGCGCACTGG CCAGCGGGGT CGTGGACGGC
ACGGAAAACC CGGTGTCCAA CTTCTGGACC CAACGCATGC ACGAAGTGCA AACCGACCTG
AGCCTGACCG AGCATGGCTA TCTGGGTTAT GCGGTGGTGA CCAATCAGCG CTTTTGGATG
AGTCTGTCCG AAAGCGACCG CGCGCTGATC GGGCAGGCTC TGCGCGAGGC GCTCGCTTTT
GGCAACCTGA TTGCCGACAC CCAAAACGAC AAGGCCCTGG CGGCCCTGCG TGCAGCGGGC
ACCACCCGCA TCCACACCCT GACCGATGGC CAGCGCGCGC GCCTGGCACG TGCGGTTGAA
CCCGTGCATC AGGCACTGGC CAACCGTATT GGTCTGCAAT GGATGGACGA CCTGCGCAAT
GCCCTGAAAC AGCGACTATC GGGTTAA
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| Protein sequence | MSPPVFSACL PRADRRQWLR GLAATALASG ALKAAPAHGI MLRFSHVVAE ETPKGLAANR
FKLLLEQRSG GRIQVVIYPD AQLYGDHDEM QALQLGAVDL LAPSLSKFGR IGFPEFELFD
LPFLFDEVAD VRRITQGPLG KRLLARLSQQ GLVGLGYFDN GFKQMSANRP LLAPADFVGL
RMRVQASRVI AAQMRALGAH PVTLPFSETR RALASGVVDG TENPVSNFWT QRMHEVQTDL
SLTEHGYLGY AVVTNQRFWM SLSESDRALI GQALREALAF GNLIADTQND KALAALRAAG
TTRIHTLTDG QRARLARAVE PVHQALANRI GLQWMDDLRN ALKQRLSG
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