| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1325 |
|---|
| Symbol | |
|---|
| ID | 3961356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1420985 |
|---|
| End bp | 1423858 |
|---|
| Gene Length | 2874 bp |
|---|
| Protein Length | 957 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916140 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_522590 |
|---|
| Protein GI | 89900119 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACT CCTTTACTGA CTCCCCGGCC AAGCCCAAAA CCTTGCTTTT GGTCGATGGT
TCCAGCTACC TGTACCGGGC CTTTCACGCC ATGCCGGACC TGCGCGCCGT ACCGGGCGAC
CCGAGCAGCG CGCCCACGGG TGCCATCCGC GGCATGATCA ACATGCTGCA AAGCCTGCGC
AAAGAGGTGC CCGCTGACTA TGCCGCCTGT ATTTTTGACG ACAAAGGCCC GACCTTTCGG
GATGCGCTGT ACCCCGAATA CAAGGCACAC CGCTCGCCCA TGCCCGATGA TTTGCGCTCC
CAGATCGAGC CGATTCATGA AGTCGTTCGC CTGATGGGCT GGAAAGTGCT GGCTGTGCCC
GGTGTCGAAG CCGATGACGT GATCGGCACG CTGGCGGTGA CGGCGGCGCG CCAGGGTATC
GAGGTGATCG TGAGCAGCGG TGACAAGGAT CTGGCTCAGT TGGTCAACTC GCACATCACC
ATCATCGACA CCATGAACGG CCGCCGCCGC GACGTGGCCG GGGTCGAGGC CGAATTTGGC
GTGCCGCCGC AGCTGATGGT GGACTTTCAG ACCCTGGTGG GCGACGTGAT TGACAACGTG
CCGGGCGTGC CCAAGGTCGG CCCCAAAACC GCGGCCAAGT GGTTGCAGGA ATACGGTTCG
CTCGACGCCG TGGTGGCCAA CGCCGACCAG ATCAAAGGCG TGGTGGGCGA GAACCTGAAG
AAGTCGCTGG ACTGGTTGCC CTTGGGTCGC CAACTGCTGA CCATCAAGAC CGACTGCGAT
CTGGATGGCT GGATGCCTGA TTTGCCCGCT CTTGATTCAA TAGCTACCGG TACAATGGAT
ACGGGGGCTC TGGCTATTTT TTATGAAAAA TACGGGTTCA AGGGGCTGGC CCGCACCTTG
GGTGGCGGGG CGGCCAGCGT GGCAAGCAAG GCAAGCTCAG GATTTGGGGT CGGACCCAAG
GAGCGAAGCG ACGCTGGCTC AGACCCCAAT TCCGTGCGCC AACTGACCCG TGAACCGGGC
TTGTTCGACG AGCCAGAAGC CGCCAGCGAC CCCATCCCCT CCAGTGTGAC CAACCTGCAC
TACGACACCA TCCTGACCTG GGAAGCGTTT GACCGCTGGC TGGCCAAAGT GCAAGCGGCA
GACCTGGTGG CGCTGGACAC CGAAACCACG TCGCTCGACG AGATGAGGGC CCAGATTGTC
GGCATCAGTT TCAGTGTGAC GCCGGGCGAG GCCGCCTACA TTCCGCTGGC GCACGCCTAC
CCCGATGCCC CGGCGCAGTT GCCGCTGGCC GATGTGCTGG CCAAACTCAA GCCCTGGTTG
CAAGACGCCA GCCACAAAAA GCTGGGCCAG CACGTCAAAT ACGACCGCCA CGTGTTTGCC
AACCACGGCA TCGAGGTGCA AGGCTACGCG CACGACACGA TGCTGCAAAG TTATGTGCTG
GAGGTGACCA AACCCCACGG CCTGGCCAGC CTGGCCGAGC GGCACCTGGG ACGCAGCGGC
ATCAGCTTTG AGGATTTATG CGGCAAGGGG GCCAATCAAA TCTGTTTTGA CCAGGTGGAT
ATTGCCCAAG CCGCCCAGTA TTCATGTGAA GACTCCGACA TGACGCTGGA CGTGCACCGG
GCGCTGTGGC CGCTGCTGCA GGCGAATGAC AAATTGCGCT TCATCTACGA GCTGGAAATC
GCCAGCAGCG AAGCGCTCTA CCGGATCGAG CGCAACGGCG TGCTGATCGA CGGCCCCACG
CTGGCGGTGC AGAGCCACGA GCTGGGCCAG CGCATTTTGC AGCTTGAAAA AGAAGCACAC
GAGCTGGCCG GGCAACCCTT TAACTTGAGC AGCCCGAAGC AGATTGCTGA AATTTTCTTC
ACCAAGCTCG GCCTGCCTGT CGTCAAGAAA ACCCCCACCG GCTCACCCAG CACCGACGAT
GAAGTGCTGC AGAAATTGGC CGAAGACTAC CCGCTACCGG CCAAAATTCT GGAGCACCGG
GGCCTGGCCA AGCTCAAAGG CACCTACACC GACAAACTGG CGCAACTCGC GCACCCGCGC
ACCGGTCGCG TGCACACGCA TTACGCGCAG GCGATTGCCG TGACCGGGCG CTTGAGCAGC
CTTGAGCCCA ATCTGCAAAA CATTCCCGTG CGCACCCCCG AGGGGCGGCG TGTGCGTGAG
GCGTTTGTGG CACCACCCGG CAGCGTCATT GCCAGCGCCG ATTACAGCCA GATTGAGCTG
CGCATCATGG CGCACATCAG TGGCGATGCG GCCCTGCTGC TGGCGTTTCA TGACGGCATC
GACGTGCACC GCGCCACCGC CTCTGAAATC TTTGGTGTGG ACAGGGCCCA GGTCACCAGC
GAGCAGCGCC GCTACGCGAA AGTCATCAAC TTTGGCCTGA TTTACGGCAT GAGTGCCTAC
GGCCTGGCCA AAGCGTTGAG CATTGACAAC ACCGCCGCCA AAAACTACAT CGAACGTTAC
TTTGACCGCT ACCCCGGCGT GAAAAACTAC ATGGAACACA CCCGGGCGCT CGCCAAGCGC
CAAGGGTATG TTGAAACCGT GTTCGGCCGC CGCTTGTATC TGCCCGAGAT CAACTCCCCC
AACGGCCCGC GTCGCAGCGG CGCCGAGCGC GCCGCCATCA ACGCGCCCAT GCAGGGCACG
GCGGCTGATT TGATCAAGCT CAGCATGGTG AAAGTGCAGC AAGTGATTGA TGAAGAAAAA
CGGGCCACCA AGATGATCAT GCAGGTACAC GACGAGCTGG TGTTTGAAGT GCCCGAGTCG
GAAATCGATT GGGTGCGCCA TGAGGTGCCC AGGTTGATGG CGGGGGTGGC GCACCTGAAG
GTGCCGCTGC TGGCCGAGGT GGGGGTGGGC GCGAATTGGG ACAAGGCGCA CTGA
|
|---|
| Protein sequence | MNDSFTDSPA KPKTLLLVDG SSYLYRAFHA MPDLRAVPGD PSSAPTGAIR GMINMLQSLR
KEVPADYAAC IFDDKGPTFR DALYPEYKAH RSPMPDDLRS QIEPIHEVVR LMGWKVLAVP
GVEADDVIGT LAVTAARQGI EVIVSSGDKD LAQLVNSHIT IIDTMNGRRR DVAGVEAEFG
VPPQLMVDFQ TLVGDVIDNV PGVPKVGPKT AAKWLQEYGS LDAVVANADQ IKGVVGENLK
KSLDWLPLGR QLLTIKTDCD LDGWMPDLPA LDSIATGTMD TGALAIFYEK YGFKGLARTL
GGGAASVASK ASSGFGVGPK ERSDAGSDPN SVRQLTREPG LFDEPEAASD PIPSSVTNLH
YDTILTWEAF DRWLAKVQAA DLVALDTETT SLDEMRAQIV GISFSVTPGE AAYIPLAHAY
PDAPAQLPLA DVLAKLKPWL QDASHKKLGQ HVKYDRHVFA NHGIEVQGYA HDTMLQSYVL
EVTKPHGLAS LAERHLGRSG ISFEDLCGKG ANQICFDQVD IAQAAQYSCE DSDMTLDVHR
ALWPLLQAND KLRFIYELEI ASSEALYRIE RNGVLIDGPT LAVQSHELGQ RILQLEKEAH
ELAGQPFNLS SPKQIAEIFF TKLGLPVVKK TPTGSPSTDD EVLQKLAEDY PLPAKILEHR
GLAKLKGTYT DKLAQLAHPR TGRVHTHYAQ AIAVTGRLSS LEPNLQNIPV RTPEGRRVRE
AFVAPPGSVI ASADYSQIEL RIMAHISGDA ALLLAFHDGI DVHRATASEI FGVDRAQVTS
EQRRYAKVIN FGLIYGMSAY GLAKALSIDN TAAKNYIERY FDRYPGVKNY MEHTRALAKR
QGYVETVFGR RLYLPEINSP NGPRRSGAER AAINAPMQGT AADLIKLSMV KVQQVIDEEK
RATKMIMQVH DELVFEVPES EIDWVRHEVP RLMAGVAHLK VPLLAEVGVG ANWDKAH
|
|---|
| |