Gene Rfer_1278 details

Gene Information

• Locus tag: Rfer_1278
• ID: 3960636
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 1370040
• End bp: 1372073
• Gene Length: 2034 bp
• Protein Length: 677 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637916093
• Product: phage integrase
• Protein accession: YP_522543
• Protein GI: 89900072
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCATC AGACTGCCCA TTCCCAGCGG GTTTTCCCGC ATGAATTCGG AGAAATGTAC 
GCCGGCACGA CCGAGGCGCA ATTCGGCCCC ATGCAACGCA GCAAGGCGAT GCGTCGCCGG 
GTCTTTGTTT TTTCCGGCGC ATTTTTGCTG TGCCTGCTGG CGAGCCTGAG TTACACCTTC 
ATGCGCAGCC CCATCTACGT GGCCAATGCC AGGGTGCAGA TCACACCGTC TGAACAGGTG 
GTGCTGGGCG ACGCGCCCGC CGTTCATGAC GGTACGCCGG CTTTTCTGAT CGAGGTGCAG 
GTTCTCACCA GCCGCCCGCT ACTTGAAAAG GTGGTCAAAC GGCTGCAGGA ACAGGAGCAT 
TTGAAGAGTC TGGACGCCGA TCCCGTCCTG GCGGTACAAG GCATGTTGAC GGTGACGCCG 
GTTGCAGGCA CGCAGGTGGT GAGGCTGCGG GCACAAGGCG CTGAGCAAAC CTTGGTGGGG 
CCCCTGGTCA ACGCCGTGAT CGATGTCTAT CGCAACGAAC AGGCGAGCAC CGGCACGGCG 
GTGTCGCAAG CCCAGTTGCT TGAAAGCCGC GAGGCGCTTC GTGTCATCGA GGCCAGCGTA 
GCCGAGAAGA GGAAAGCGCT GGAGGCGCTC AAACTGCGCT CCAACATCGT GTCGAGTGAA 
CGCGATGAGA ACCAGACGCT GTCGCGCCTG AAAGGGCTGG GCACCTCACT GACTGCGGCG 
ACTGATCGCG AGGCCACGGC GGCTGGCCGC GTCCGGGCCA TCGAGCAAGC CATCGCGCAG 
GGCAACCGCA CGCCGCTGGC CAAAGACAAT CCCACCGTGG CCGCCATTGA GTCGCGCCTG 
TCGCAGGCGA AGGAAGAATG GCGCGCTTTG GAGCGCCAGT TCACGCCGCA GTATCTGGAC 
ATGGACGCGA ATGCCCGTGG CCTCAAGACC AGAATTTCCA ACCTGGAGCA ACAGCTTGAG 
GCCGAACGCC AGAAAAGCCG GGAGATGGCG CTGGCCGACG CCAAAGAGGA ACTTGCCAGT 
GTGCGGGGCA CGACGCAGCG CCTGCAGCAG CAACTCTCGC AGGACAGACA GGACGTGCAG 
ACATTCAGCC GCCGGTTCAG TGACTACCAG GGCATGTTGG AAGAGCTGAA GGGTCTGGAG 
AAAATGCAGC AGACCGCCCA ACAGAAGCTG GTCGCCCTGG AATCCAGCGA AACGGCACGC 
CGGCCACGGA TTCTGGTGGT GGAACCCGCG GCCACACCCG ATGCGCCATG GCGCCCGCTG 
TACTGGCGCG ATGCAGGCAT CAGCCTGGCC GCCTCCATCG TGCTTGGTTT TTTGGCGGTC 
TGGTTCGTGG AATTTTTCAA CCGGACAGAG ATGGAGCCCC AGGGGCCTTC GACCGTGATC 
GTTCCACAGC CCTGGATGGC GATTCCCCAG CCGCTTGAGC CGGCGCTGGG CGCAGGGCCG 
ACGCCTGAGA CGCTGACGGG CGGACCTGAC ACCCGGCTTT TGACCCAGCC CCTGCCGCGG 
GAACTGCGCG CCGATGAAGT TGAGAAATTA CTGGCGTGCG CGGCGCCAGA GAATCTGCCC 
ATCCTGGCCT GCCTGCTGTG CGGCTTGAGC GCCGACGAAG TCGTGTCTTT GCAGCGCCAG 
CATGTAGACA CGGCAACGGG CACGCTCAAG GTGCCGGGCG AGTCGAGCCG CGCCGTGCCC 
TTACCGGTCC ATGTGCTTGC CCTGCAGACG CACCGTCAGG CGGATGCCCC CGACGCGCCT 
CTTTTTTTCA AGGCAACGGA CCGCCCCCTG GACACGGAGG ACATCAATTC CGTTGTCACC 
TCCAGCGCCT ACGACGCTGG TTTGGAGCAG CCGCAATCGG TCGCGCCGGC CACGCTGCGC 
CACACTTATG TGGCATTTCT GGTGCGCCAG GGTTTGCGCT TCAGCGAGCT GGGCCGCCTG 
GTTGGCCGCC TGAGCGCGGA AGCTCTCCAT CATCTGGCGC CGCTAGCGCC AGATGCCCAA 
CGGGTATCGA TCGACAGTGT GGAGCGCGTG TTGCCAGCCT TGCGCACGCG CTAG 

 

Protein sequence

MSHQTAHSQR VFPHEFGEMY AGTTEAQFGP MQRSKAMRRR VFVFSGAFLL CLLASLSYTF 
MRSPIYVANA RVQITPSEQV VLGDAPAVHD GTPAFLIEVQ VLTSRPLLEK VVKRLQEQEH 
LKSLDADPVL AVQGMLTVTP VAGTQVVRLR AQGAEQTLVG PLVNAVIDVY RNEQASTGTA 
VSQAQLLESR EALRVIEASV AEKRKALEAL KLRSNIVSSE RDENQTLSRL KGLGTSLTAA 
TDREATAAGR VRAIEQAIAQ GNRTPLAKDN PTVAAIESRL SQAKEEWRAL ERQFTPQYLD 
MDANARGLKT RISNLEQQLE AERQKSREMA LADAKEELAS VRGTTQRLQQ QLSQDRQDVQ 
TFSRRFSDYQ GMLEELKGLE KMQQTAQQKL VALESSETAR RPRILVVEPA ATPDAPWRPL 
YWRDAGISLA ASIVLGFLAV WFVEFFNRTE MEPQGPSTVI VPQPWMAIPQ PLEPALGAGP 
TPETLTGGPD TRLLTQPLPR ELRADEVEKL LACAAPENLP ILACLLCGLS ADEVVSLQRQ 
HVDTATGTLK VPGESSRAVP LPVHVLALQT HRQADAPDAP LFFKATDRPL DTEDINSVVT 
SSAYDAGLEQ PQSVAPATLR HTYVAFLVRQ GLRFSELGRL VGRLSAEALH HLAPLAPDAQ 
RVSIDSVERV LPALRTR