| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0882 |
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| Symbol | |
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| ID | 3963656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 921249 |
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| End bp | 922925 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637915710 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_522161 |
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| Protein GI | 89899690 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCCT CTCGCACCGG TGGCCAGATT CTGGTTGACC AACTCCTCGT GCACGGCGTT
CAGCAGTTGT TCTGCGTACC CGGCGAAAGT TTTCTGGCCG TGCTCGATGC CCTGTACGAC
GCGTCGATCA CCGTGTCCGT GTGCCGCCAG GAAGGTGGCG CAGCCATGAT GGCCGAGGCC
CAAGGTAAGT TGACCGGGCG GCCTGGCATC TGCTTTGTCA CCCGTGGCCC CGGAGCCACC
AATGCGGCAG CAGGCGTGCA CATTGCGCAT CAGGACTCAA CGCCGCTGCT GCTGTTTGTC
GGCCAGGTGG CGCGCGAGGC GCTGGGGCGC GAAGCCTTTC AGGAGCTGGA TTACAGCGCA
GTGTTTGGCA GCATGGCCAA GTGGGTGGTG CAGATTGATG ACGCCAGGCG CCTGCCCGAG
CTGGTGTCGC GCGCCTTTCA CGTCGCCACC TCTGGCCGCC CTGGCCCGGT GGTGATTGCC
CTGCCGGAAG ACATGCTGAG AGAAGCGGCG AGCGTGGCCG ATGCCCTGCC CTATACAGTG
ACTGAAATCC ACCCCGGGGC GGCGCAACTG ACGGAACTGC AAGAGCGCTT GGCCAACGCG
CAGCGTCCGG TGGTGATTCT GGGTGGTAGC CGCTGGTCAG ATGCCGCGGT GCAGCAGTTC
ACCCGCTTTG CCGAAGCCTT TTCACTGCCG GTTTTTTGCT CGTTCCGTCG CCAGATGTTG
TTCAGCGCGA ATCACGCTTG CTACGCTGGC GACTTGGGGT TGGGGGCCAA CCAGCGCCTG
CTGGCACGCA TCCGCCAGTC GGATCTGATC CTGCTGCTGG GTGGGCGAAT GTCCGAAGTG
CCGTCTCAAG GCTACGAACT GCTGGGCATT CCTGCACCGC AGCAAGATCT GGTCCATGTG
CATGCCGATG CCAATGAACT GGGCAAGCTG TACCGTGCTG CCCAGTCCAT CCAGGCTACA
CCGCGGGCTT TTGCTCAAGC CGTGTGCACG CTGCGCCCCA AAGCCCCGGT GGCATGGGCT
GCAGCCACCA TTGATGCCCA CGAAGATTAC CTGCGCTGGA GCGACCCGGC CCCCATCCGC
ATCCCCGGCC CGCTGCAAAT GGGCGAGGTG ATGCAACACC TGCGTGCCAC CCTGCCGGCC
GACACCATCT TCTGCAACGG TGCCGGCAAC TTTGCCACCT GGGTGCACCG CTTTTGGCCA
TTCACCAGTT ATGCCAGCCA ACTGGCACCC ACCAGCGGCT CCATGGGCTA CGGCCTGCCT
GCCGGTGTCG GTGCCAAGCG CCTTTGGCCG CAGCGCGAGG TGGTGGTGTT TGCCGGTGAC
GGCGACTTCA TGATGCATGG CCAGGAATTC GCCACTGCGG TGCAATATGA CCTGGCCATC
ATCGTGGTGC TGCTGGACAA CGCCATGTTT GGCACCATCC GCATGCACCA GGAGCGCAAT
TACCCCGGCC GCGTCAGCGC CACACAGCTG AAAAACCCCG ACTTCTGCGG CTACGCAAAG
GTGTTTGGCG GCCATGGTGA ACGCGTCACC ACGACCGAAG AGTTCGCGCC CGCTTTGGCA
CGTGCCCGGG CCAGCGGCAA ACCGGCCATC CTGCACTGCC TGCTGGACGC GCAAGCCATC
ACCCCGACCA GCACGCTCGA TGGCATTCGT GGTGCTGCGT TGGCCGCAGC CCGATAG
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| Protein sequence | MTSSRTGGQI LVDQLLVHGV QQLFCVPGES FLAVLDALYD ASITVSVCRQ EGGAAMMAEA
QGKLTGRPGI CFVTRGPGAT NAAAGVHIAH QDSTPLLLFV GQVAREALGR EAFQELDYSA
VFGSMAKWVV QIDDARRLPE LVSRAFHVAT SGRPGPVVIA LPEDMLREAA SVADALPYTV
TEIHPGAAQL TELQERLANA QRPVVILGGS RWSDAAVQQF TRFAEAFSLP VFCSFRRQML
FSANHACYAG DLGLGANQRL LARIRQSDLI LLLGGRMSEV PSQGYELLGI PAPQQDLVHV
HADANELGKL YRAAQSIQAT PRAFAQAVCT LRPKAPVAWA AATIDAHEDY LRWSDPAPIR
IPGPLQMGEV MQHLRATLPA DTIFCNGAGN FATWVHRFWP FTSYASQLAP TSGSMGYGLP
AGVGAKRLWP QREVVVFAGD GDFMMHGQEF ATAVQYDLAI IVVLLDNAMF GTIRMHQERN
YPGRVSATQL KNPDFCGYAK VFGGHGERVT TTEEFAPALA RARASGKPAI LHCLLDAQAI
TPTSTLDGIR GAALAAAR
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