| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0821 |
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| Symbol | hemE |
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| ID | 3964180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 855395 |
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| End bp | 856504 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637915651 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_522102 |
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| Protein GI | 89899631 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00198157 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACACTT CAACCAACTC CAGCGCTTTT GCGCCCCTGA AAAACGACAC CTTCCTGCGC
GCCTGCCTGC GCCAGGCCAC TGACTACACG CCTATCTGGA TGATGCGCCA GGCCGGGCGG
TTTTTGCCGG AATACCGGGC TACGCGCGCC AAAGCGGGCA GCTTCATGGG TCTGGCCACC
AACACCGACT ACGCCACCGA AGTCACGCTG CAGCCGGTCG AGCGCTTTCC GATTGATGCT
GCCATCTTGT TCAGCGACAT CCTCACCGTG CCCGACGCCA TGGGCTTGGG CCTGTCGTTT
GCCTTGGGCG AAGGTCCCAA ATTTGCCCAT CCGGTACAGG ACGAGGCAGC CGTTGCCAAG
CTGGCCGTGC CCGACATGGA CAAGCTGCGT TATGTGTTTG ACGCCGTCAC CTCGATTCGC
AAGGCCCTCA ACGGCAAAGT GCCGTTGATC GGTTTTTCAG GCAGCCCCTG GACGCTGGGC
TGCTACATGG TGGAGGGTGC TGGCTCGGAC GATTACCGCT TGGTCAAGAC CATGCTCTAC
AGCCGCCCTG ACCTGATGCA CAGGATTTTG CAGATCAACG CCGACTCGGT GGCGCAGTAC
CTCAACGCGC AGATCGAAGC GGGCGCCCAG GCGGTGATGA TTTTTGACAG CTGGGGCGGT
GTGCTGGCCG ACGGCGCGTT CCAGGAGTTC AGCCTGGCCT ACACGGCCCG GGTGCTGGCG
CAACTCAAGC GCGAACACAA CGGGGCGCGT ATTCCGCGCA TCGTCTTTAC CAAAGGCGGC
GGCATGTGGC TGAAGGAAAT GGGGCTACTT GACTGCGACG TGCTGGGCCT GGACTGGACC
GTCAATCTGG CCAAAGCGCG TGCCATTGTG GGCGACAGCA AAGCCTTGCA AGGCAACATG
GACCCCAACG TGCTGTTTGC CTCGCCGGCC CAAATCGCCG CCGAAGCGAC CAGAGTGCTG
GACAGTTTTG GCACGCCCTA TGCCGGTGAA GGAACCGGTC CGACGCATAT TTTCAACCTG
GGACATGGCA TCAGCCAGCA CACACCGCCG GAGCATGTGG CGGCGCTGGT ACAGGCGGTG
CATGAGCACT CGCGCAAGAT GCGGGCCTGA
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| Protein sequence | MNTSTNSSAF APLKNDTFLR ACLRQATDYT PIWMMRQAGR FLPEYRATRA KAGSFMGLAT
NTDYATEVTL QPVERFPIDA AILFSDILTV PDAMGLGLSF ALGEGPKFAH PVQDEAAVAK
LAVPDMDKLR YVFDAVTSIR KALNGKVPLI GFSGSPWTLG CYMVEGAGSD DYRLVKTMLY
SRPDLMHRIL QINADSVAQY LNAQIEAGAQ AVMIFDSWGG VLADGAFQEF SLAYTARVLA
QLKREHNGAR IPRIVFTKGG GMWLKEMGLL DCDVLGLDWT VNLAKARAIV GDSKALQGNM
DPNVLFASPA QIAAEATRVL DSFGTPYAGE GTGPTHIFNL GHGISQHTPP EHVAALVQAV
HEHSRKMRA
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