| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0782 |
|---|
| Symbol | |
|---|
| ID | 3964200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 819716 |
|---|
| End bp | 820462 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637915612 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_522063 |
|---|
| Protein GI | 89899592 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATGA GTTTTGTGGA TGCCCCACGT GCTGTGATCG ATGCCCCGTC AAGGCCGATC
AGGGTGTTTC TGGTTGACGA CCATCAAATC ACGCTTTGGG GCCTGCGACG GCTGATCGAA
GCCACGAACC CGCGCATGGA GGTGGTCGGC ACCGCCAGTT CACGCACCGA ACTACTGAAC
CATGACGCCG CCGCCACCGC AGACGTCATC CTGCTCGACC TTGATCTTGG TGGTGAAGAC
GCGGCCGCCT CGCTCGCCGA CCTGCGCCAG CGTTGCCCTG GGCGGGTGCT CGTGCTGACC
GCCAGCGATG ACCCTGCCCA GCACCGCGCC GCCATGGTGA AGGGCGCGCG CGGCGTGATC
CACAAGTCAG AGGCGGCGGA AACCATTCTG CGCGCCATCG AGAAGGTCAA CAACGGCGAA
GTCTGGCTGA ACCGCGCGCT GCTCGGTGAA GTGCTCGGCA TGCTGACTGA CGACAGCCCC
GCGGCAGCGC CGCGCCAGGC CGACCCCGAC GCGCAACGTA TTGCCAGCCT GACGACCCGC
GAACGGGAGA TCGTGGTCAC CATGGTGCAC TGCGCCGGCG CCAAGCAGCT CGCGGTGGCC
GACGAACTCA AAATGAGCGA ACATACCCTG CGCAACCACC TAACCACCAT TTACGACAAA
CTCGGCGTGC GCGGGCGGCT GGAGTTGCAT GTTTTTTCCA CCATGCATGG GCTTGGTGCG
GCGACAGGCA GAGCGTGTGG TGCATGA
|
|---|
| Protein sequence | MQMSFVDAPR AVIDAPSRPI RVFLVDDHQI TLWGLRRLIE ATNPRMEVVG TASSRTELLN
HDAAATADVI LLDLDLGGED AAASLADLRQ RCPGRVLVLT ASDDPAQHRA AMVKGARGVI
HKSEAAETIL RAIEKVNNGE VWLNRALLGE VLGMLTDDSP AAAPRQADPD AQRIASLTTR
EREIVVTMVH CAGAKQLAVA DELKMSEHTL RNHLTTIYDK LGVRGRLELH VFSTMHGLGA
ATGRACGA
|
|---|
| |