| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0515 |
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| Symbol | |
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| ID | 3963815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 536665 |
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| End bp | 538884 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637915346 |
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| Product | glycogen debranching protein GlgX |
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| Protein accession | YP_521798 |
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| Protein GI | 89899327 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGACCA GCGATGCAGA TGCCCTTGCC AACAGGCCCG GCTTGCCGTG TAAAACCGGG
CAGTCCTGGC CGCTGGGCGC CACCTGCATG ACGCTTGACG GCCAGAGCGG CATCAACTTC
GCTGTCTATT CCCGCCACGC CGAGGCGATT GAGCTGTGTC TGTTTGACGA ACATGGTGCG
CAGGAGACTG CTCGCATCCG CTTGCCCGCG CACAGCGACG GTGTCTGGCA CGGTTTTGTG
CGCGGTTTGA AGGCCGGTCA GTTGTATGGG CTGCGTGCGC ATGGACCGTA TCAGCCCGCG
CACGGCCAGC GTTTCAACCC GGCCAAATTG CTGCTTGATC CCTTTGCGCG CGCGCTCAAA
GGGTCCACGC AGCACCTGTC GCTGGAGCGC GACTACCTGG GGCAAGCGGC TGCCGATGCA
ACCGTGCTAA ATGCCGCGCC CGACCCGCAC GACAACGCGC CACGCATGCC CAAAGCCCAG
GTGCTGGACC TGGCGGCCGA GTTGCAGGGG GGAGCGGCCA TCACCCGCAA GCCCGGGGTG
CCGCTGGCCC GCACCGTGCT GTACGAAGCG CATGTCAAAG GGCTGACGCA GCGCCACCCC
GACGTGCCGG TCGCCTTGCG CGGCACCTAT GCCGGCTTGG CCAGCCCACC CATGCTGGCG
CATTACCGGC ACCTGGGCAT CACCACCTTG TGTTTGTTGC CGGTGCAACT GTTTGTGACC
GAAGCACATC TGCTGCAAAA GGGCTTGCGC AACTACTGGG GCTACAACAC CCTGGCTTAT
TTCGTCCCTG AGCCGGCTTA CGCCAGCGGC CAGTTTACCG ATGACCGTAC CGAATTCAGG
CACATGGTGG ACCAGTTGCA CCAGCACGGA CTGGAGGTGG TGCTGGATGT GGTGTTCAAC
CACAGCGCCG AGAGTGACAC TTTTGGCCCC ACCTTGAGCT GGCGCGGTCT GGACAACGCC
AGTTGGTACG CACTGGACAC GGCGGGCCAG TACCTTAACT TCAGCGGTTG CGGCAACAGC
TTCAATCTGG CGCAGCCCTG CGCCGTACAG CTGGTCATGG ACAGCCTGCG CTGGTGGGTG
CAGGCGTTTG GTGTGGATGG GTTTCGCTTT GACCTCGCCA CTGCACTGGG GCGCGACCCG
ATTCTTCATC ACGATTTTCA CCCGATGTCC GGCCTGCTGA CGGCCCTGGC ACAAGACCCG
GTCTTGGCCG GTATCAAGCT GATTGCCGAG CCGTGGGACC TTGGGCCGAA TGGCTACCAA
CTCGGACGAT TTCCCGCTCG CTGGCATGAA TGGAATGACC GTTTTCGCGA TACCAGCCGC
GCCTTCTGGT TGGGCCACCA CAGCACGCGG GGCGGGCTGG CGCGCCGGCT CACGGGTTCC
AGCGATTACT TTGACCATGA CGGCCGCTCT CCCCTGGCCT GTATCAACCT GCTGAGCGCC
CATGACGGCA TGACGCTGGC GGATTTGACC TCATACCGCC ACAAGCACAA CCTGGCCAAT
GGCGAAGGCA ACCGCGATGG ACAGCACCAC AACCTCAGCG CCAACGCCGG GGTGGAGGGC
CCCACGGACG ATGTTACGGT GCAGTCCGTG CGCGCGCAAT GGCGGCGCGC CTTGCTGGCC
ACGCTGTTTT GTTCGCAGGG ACTGCCACAG CTGCTGGCAG GTGACGAACT GGGCCATTCC
CAACAGGGAA ACAACAACGC CTACTGCCAG GACAACGAGA CCAGCTGGCT CGATTGGCCA
GGTGCAGACC CTGAATTGAC CAATTTTGTC GGGGGCCTTG TCCACCTGCG TCAAACCCAC
GCGGCGCTGC GCCATGCGCG CTGGTTCACC GGTCGCGCCA CGGCCGGGGC CGGGGTCACG
GCAGCAGACA TCGCCTGGCG CAGGCCGGAC GGCGCGGCCA TGGCTGCACC CGACTGGGAC
GATGCTCAAT CGCGCAGTTT TGCCGGCCTG ATCGAAGTCA CCGACACGGC CGAAGCGAGT
GACGCCATGC CGCTGCGCTG GTTGCTGCTG GTCCATGCGG GCGATGAGCC CCAGATTTTT
GCGCTGCCCC CGGGGCGTTG GCACACCGTG TTGGACAGTG CCGCCAGCTG GGTGTTGCCG
GATGCCCAAT GGAACTCTGC GCCCGCCTGC ACGCAGGCGA TCACTGCCGC ACCACGCACG
ATGCTCGGAC TCGTCCAGCA CGTGACGAAT CCCGTGTTGC CACTTGAGGC TCAAGCATGA
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| Protein sequence | MLTSDADALA NRPGLPCKTG QSWPLGATCM TLDGQSGINF AVYSRHAEAI ELCLFDEHGA
QETARIRLPA HSDGVWHGFV RGLKAGQLYG LRAHGPYQPA HGQRFNPAKL LLDPFARALK
GSTQHLSLER DYLGQAAADA TVLNAAPDPH DNAPRMPKAQ VLDLAAELQG GAAITRKPGV
PLARTVLYEA HVKGLTQRHP DVPVALRGTY AGLASPPMLA HYRHLGITTL CLLPVQLFVT
EAHLLQKGLR NYWGYNTLAY FVPEPAYASG QFTDDRTEFR HMVDQLHQHG LEVVLDVVFN
HSAESDTFGP TLSWRGLDNA SWYALDTAGQ YLNFSGCGNS FNLAQPCAVQ LVMDSLRWWV
QAFGVDGFRF DLATALGRDP ILHHDFHPMS GLLTALAQDP VLAGIKLIAE PWDLGPNGYQ
LGRFPARWHE WNDRFRDTSR AFWLGHHSTR GGLARRLTGS SDYFDHDGRS PLACINLLSA
HDGMTLADLT SYRHKHNLAN GEGNRDGQHH NLSANAGVEG PTDDVTVQSV RAQWRRALLA
TLFCSQGLPQ LLAGDELGHS QQGNNNAYCQ DNETSWLDWP GADPELTNFV GGLVHLRQTH
AALRHARWFT GRATAGAGVT AADIAWRRPD GAAMAAPDWD DAQSRSFAGL IEVTDTAEAS
DAMPLRWLLL VHAGDEPQIF ALPPGRWHTV LDSAASWVLP DAQWNSAPAC TQAITAAPRT
MLGLVQHVTN PVLPLEAQA
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