| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0512 |
|---|
| Symbol | |
|---|
| ID | 3963812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 532343 |
|---|
| End bp | 533827 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637915343 |
|---|
| Product | glycogen/starch synthases, ADP-glucose type |
|---|
| Protein accession | YP_521795 |
|---|
| Protein GI | 89899324 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0297] Glycogen synthase |
|---|
| TIGRFAM ID | [TIGR02095] glycogen/starch synthases, ADP-glucose type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTT TGTATGTTTG CACCGAACTG TTTCCATTTC TCAAGACCGG GGGGCTGGCC
GATGTCAGCG CCGGTCTGGC CCCGGCACTG CAGGCTGTGG GCTGCGAGGT GCGCTTGCTG
CTGCCGGCCT TCCCAGCCAT TGCCAACCAG GCCCTTTCAA CGCGGCCTAT TGCCAGTTTG
CCGGCAGGGC CCATGCCCTG GGGCCCGGCC CCGGTCCTGC CCCCTGCCAG CCTGACGCTG
GCCACTCTGC CCGGGCTGGA ACTGCCGGTT TATCTGGTTC AAGCCCCGGC CTTGTATGAC
CGTCCCGGCA ACCCCTACCT CGGGCCGGAC GGCAAGGACT GGAGCGACAA CGCGATTCGC
TTCGCGGCGC TGGGATGGGC TGGAGCGACC CTGGGGCAGG GGCTTGACCC GCACTGGCGA
CCCGATGTCA TTCACTGCCA CGACTGGCAT AGCGGCCTGA CCCCGACCTA TGTGCGGGCC
TTTGCCGCAG CCAAACAAGC CACACCAGCG ACAGTTTTCA CCATTCACAA CCTGGCATAT
CAGGGCTTGT TTGCAGCCGC AGAAGTCACC CGGCTGGGTC TTCCCAAGTC GTGGTTTGAT
ATCGATGGCT TTGAGTTTTT TGGGAAGGTC TCCTTCATGA AGGCGGCGCT TCGGTATGCT
GACCGCATTA CCACGGTCAG CCCGACCTAT GCCCGTGAAA TAAGCTCCGA AGCGCAAGGC
TGCGGACTCG ATGGCCTGCT GCGCGAGCGC GCCAACTCAC TCTCGGGAAT TCTCAATGGG
GTGGATGACC TGATATGGAA CCCGGCCACC GATGCCTTGC TGCCTGCCCC CTACGATGAG
CACAAGCTGC AGGGCAAAAC TCTCGCCAAG CGCGCACTTC AAACCAAATT TGGACTGGAG
CCGCGTGCCA ATGCCCTGGT ATTTGGTGCC GTCAGCCGCT TGACGGAGCA AAAAGGGCTG
CACCTGCTGC CCCAGGTGTT GGCGGACATG GTTCAGCGTG GTGGTCAACT GGCCTTGCTG
GGCCAGGGTG ACGTAGCGCT GGAACGGGCC TTTGTGGATG CGGCCATCCG CTACCCCGGC
CAGGTCGGTG TGCGCATTGG CTACGACGAG GTCACCGCCC ACGCGGTCAT TGCCGGTGCC
GATGTCATCC TGGTTCCCTC TGAATTTGAG CCTTGCGGCC TGACGCAGCT CTATGGCTTG
CGCTACGGCA CCTTGCCTTT GGTACGCCGG GTCGGCGGTC TGGCCGACAC GGTGGTCGAT
TGCACGCTGG AAAATCTGGA CGAAGGCAGT GCGACTGGTT TTGTGTTCGA CGAATTGAGC
CCCGCCGGAT TGCTCAGCGC CGTGCGGCGG GCCTTTGTCT TGTTTCGACG CCCCGACGAA
TGGTTGGCAG TGCAACAACG GGGCATGGGG CTGCGCTTTG ACTGGCTCGC TTCTGCGCAG
CACTACCTGG CCATGTACCA AACATTGCGG CCGGGTGCAA AATAA
|
|---|
| Protein sequence | MKVLYVCTEL FPFLKTGGLA DVSAGLAPAL QAVGCEVRLL LPAFPAIANQ ALSTRPIASL
PAGPMPWGPA PVLPPASLTL ATLPGLELPV YLVQAPALYD RPGNPYLGPD GKDWSDNAIR
FAALGWAGAT LGQGLDPHWR PDVIHCHDWH SGLTPTYVRA FAAAKQATPA TVFTIHNLAY
QGLFAAAEVT RLGLPKSWFD IDGFEFFGKV SFMKAALRYA DRITTVSPTY AREISSEAQG
CGLDGLLRER ANSLSGILNG VDDLIWNPAT DALLPAPYDE HKLQGKTLAK RALQTKFGLE
PRANALVFGA VSRLTEQKGL HLLPQVLADM VQRGGQLALL GQGDVALERA FVDAAIRYPG
QVGVRIGYDE VTAHAVIAGA DVILVPSEFE PCGLTQLYGL RYGTLPLVRR VGGLADTVVD
CTLENLDEGS ATGFVFDELS PAGLLSAVRR AFVLFRRPDE WLAVQQRGMG LRFDWLASAQ
HYLAMYQTLR PGAK
|
|---|
| |