| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0247 |
|---|
| Symbol | |
|---|
| ID | 3962305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 244915 |
|---|
| End bp | 246318 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637915082 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_521535 |
|---|
| Protein GI | 89899064 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCTC TGAACGTTTT AGTTGTTGAC GACGAACCGG CATTGCGCCA GATTCTTGCT
GCCGCAGTGA TCAAAGCTGG CTATTCGGTG GAACAGGCCA ACGGCGTAAA ACAGGCCGCG
ACGATGCTTT CCCGCGGGGA CTTCGATGTG GCACTATGCG ATATCAAGAT GCCCGACGGC
AACGGTATCG AACTGGTACG CAATTGCCGT GCCGCCGGTA TCGAAACGAC GTTTATCATG
GTTACGGGAT TTGCTTCGAT CGAAACGGCT GTCGAAGCGC TGCAGGCCGG GGCGTCGGAT
TACATCACCA AGCCAGTACG CTATGAAGAG GTGGCGCACA GACTTTCTCA AATCGACGCG
TTGCGCGGCT TGCGCGAAGA AAATAAGGCC TTGCGCAAGG TTGTAAGCGA TAGCTCACCC
AAATTGTACC GATTCACCTC GCCCGGAATG CTCGAAGTAG AGAGACTAGC GGGAAAAGTA
GCGCCCACTG ACTGCACGGT CCTGATCACC GGAGAAAGCG GCACCGGCAA GGGCGTGGTG
GCGCGACTGA TCAACGATCA GAGCAAGCGG CGCACTGGCC CGTTTTTGCA GGTCAATTGC
AGCGCGGTGC CCGAACACCT GCTGGAGAGC GAGTTTTTCG GACATACCAA AGGCGCGTTT
ACCGGTGCCG ATCATGCCCG CAAGGGGCTT TTTTTGCAGG CCAACGGTGG CACCTTGTTC
CTTGACGAGA TTGGCGAACT ACCCTTGCAC ATGCAGACCA AACTGCTGCA CATGGTCGAG
GACAAGGAGG TCAGGGCGCT AGGAAGCGAG CAAGTGCGCC ATGTCGATAC GCGCATCATC
GCGGCGACGA ATGCCGATCT TGTGAACCTG GTGAAAGAGG GTAAATTTCG CGAAGACCTG
TATTTTCGGC TCAGCATGTT CCAGATTCAG ATACCACCAT TGAACGAGCG GCAGACGGAC
ATGCCCGGAC TGATCCGTTT TTTGCTTCAC AACCTGTGCC CGAGCGGATT GGGAACAATG
GAAATTGATC CTTTGGCAGA AGAAATTCTG CTGGCTCATA GATGGCCAGG AAACGTGCGA
GAACTTGAAA ACGTAATCAC CCGCGCGTGC ATCCTGGCGG AAGACAACCG CATTTCGGTC
GCTGACCTGC CCGCGACGAT TATCCAGACA AACTTACCAA AGACATTGGC CGGTGCGGCG
ATAGGCTCCA ATGGCTCCCT TCGCGATCAG ATGCGAAAAT TGGAACTTGA AATCCTGCAG
CGTGCGATCG AAGGTGCGGG GGGCGATCGC AAGCTGGCCG CACAGAAATT AGGAATCGGC
TTGTCTAGCC TGTACCGCAA GTTCGACGAG TTTCAGCCCG ATGCATTGAG CAGCGGAGAC
GCTGCGCCAG TGCACCCATC CTAA
|
|---|
| Protein sequence | MPSLNVLVVD DEPALRQILA AAVIKAGYSV EQANGVKQAA TMLSRGDFDV ALCDIKMPDG
NGIELVRNCR AAGIETTFIM VTGFASIETA VEALQAGASD YITKPVRYEE VAHRLSQIDA
LRGLREENKA LRKVVSDSSP KLYRFTSPGM LEVERLAGKV APTDCTVLIT GESGTGKGVV
ARLINDQSKR RTGPFLQVNC SAVPEHLLES EFFGHTKGAF TGADHARKGL FLQANGGTLF
LDEIGELPLH MQTKLLHMVE DKEVRALGSE QVRHVDTRII AATNADLVNL VKEGKFREDL
YFRLSMFQIQ IPPLNERQTD MPGLIRFLLH NLCPSGLGTM EIDPLAEEIL LAHRWPGNVR
ELENVITRAC ILAEDNRISV ADLPATIIQT NLPKTLAGAA IGSNGSLRDQ MRKLELEILQ
RAIEGAGGDR KLAAQKLGIG LSSLYRKFDE FQPDALSSGD AAPVHPS
|
|---|
| |