| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0191 |
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| Symbol | |
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| ID | 3961345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 188463 |
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| End bp | 189962 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637915026 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_521480 |
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| Protein GI | 89899009 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGCGGC GGTGGCTGGA TAATCGGTGC ATGTCCTCCC CTATTCGCTT GCTGGCTATT
CTGATTGGGG CCTTGACGCT GTGGCCCGCC CTGGCACAAA ACCTGCCGCC CGAGGTGGAT
GCGGCGCTGG CGCGCGCCAG GGTGCCGCGT GATGCCGTGT CGCTGCTGGT GATGGACGCC
GAGGGCAAAT TGCCGCCGCG CCTGAGCCAC CGCGCCACCG TGCCCATGAG CCCGGCCTCG
GTGATGAAGC TGGTGACCAC CTACGCGGCG CTGGACCTGC TGGGTCCGGC CTACAGCTGG
CGCACGCCGG TCTATGTGGA AGGCTCGGTG AAGAACGGCA CTTTGTTCGG CAATCTCTAC
ATCAAGGGCC AGGGCGACCC CAAGCTGGTG GCCGAGCGCC TGTGGCTGCT GCTGCGCCGG
GTGCAAGGCC TGGGGATCCA AAAAATCGCC GGTGACGTGG TGCTGGATCA CAGCGCCTTC
GAGCCGCTGG ACGTGGACCC GGCCAGCTTT GACGGCGAGC CGCTGCGCCC CTACAACGTG
GCGCCCGACG CGCTGCTGCT CAACTTCAAA TCCGTCGTCA TGACCTTCGT GCCGGACCTG
GTCGCCAACA GCGCATCGGT GCAGTTCGAG CCGCCGCTGT ATGGCGTGCA GATGCAGGCC
AGCGTGCCGC TGGCCAATGG GACCAATGGC ACAAAGGGGG CCCAGGGCAC GAATGGCAGT
TGCGGCGACT ACCGGGCGGC GCTCAAGGCC GATTTCTCCG ACCCGGCGCG CATTCGTTTT
GCGGGCAGCT ACCCGGCGAG CTGCCTGGAG AAAGCCTGGC CCGTCGCCTA TGCCGACCCC
GCCAGTTACA ACGCGCGCGC CGTGCAAGGC CTGTGGCAAC AAATGGGCGG CCAGCTCGGC
GGCACGGTGC GCTTGGGTTC CGTGCCGCCG CAGGCACTGG GGCTGCCGCC CAAGTTTGAA
GTCGCCTCGC CGCCGCTGGC CGAGGTGATC CGCGACATCA ACAAGTACAG CAACAACGTG
ATGGCGCAAC AGCTGTTTCT GACGCTCAGC CTGAACGCCC AGGGTCAGGG CACGCGTGCG
GCTTCGCGCG ACCTGGTGCA GCGTTGGTGG CAGCAACGCA TCAGCGCCAC GGACGTGCCG
ACGCTGGACA ACGGCGCTGG CCTGTCGCGC GAGGCGCGCA TCAGCGCCCA GGCCCTGGCG
CGCCTGCTGC AGACGGCCTA CGTGTCGCCC CTGATGCCCG AGCTGATGAG TTCACTGCCG
ATTGCCGGTG TCGACGGCAC GCTCAAACGC AGCCAAGCGC AGTCGCAGGG CCGGGCGCAT
CTCAAAACCG GCAGCCTGCG CGACGTGGTG GCGGTGGCCG GCTATGTGCA CGCGGCCAGC
GGCCGGCGTT ACGTGCTGGT CGCCCTCATC AATCACCCCA ACGCCAATGC CGCCCGCCCG
GCGCTGGAGG CGCTGCTGGA CTGGACGGTG AGAGACAATG GCGCCCATGT CCCTGACTGA
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| Protein sequence | MARRWLDNRC MSSPIRLLAI LIGALTLWPA LAQNLPPEVD AALARARVPR DAVSLLVMDA
EGKLPPRLSH RATVPMSPAS VMKLVTTYAA LDLLGPAYSW RTPVYVEGSV KNGTLFGNLY
IKGQGDPKLV AERLWLLLRR VQGLGIQKIA GDVVLDHSAF EPLDVDPASF DGEPLRPYNV
APDALLLNFK SVVMTFVPDL VANSASVQFE PPLYGVQMQA SVPLANGTNG TKGAQGTNGS
CGDYRAALKA DFSDPARIRF AGSYPASCLE KAWPVAYADP ASYNARAVQG LWQQMGGQLG
GTVRLGSVPP QALGLPPKFE VASPPLAEVI RDINKYSNNV MAQQLFLTLS LNAQGQGTRA
ASRDLVQRWW QQRISATDVP TLDNGAGLSR EARISAQALA RLLQTAYVSP LMPELMSSLP
IAGVDGTLKR SQAQSQGRAH LKTGSLRDVV AVAGYVHAAS GRRYVLVALI NHPNANAARP
ALEALLDWTV RDNGAHVPD
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