| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_B3968 |
|---|
| Symbol | |
|---|
| ID | 3614235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007348 |
|---|
| Strand | - |
|---|
| Start bp | 601887 |
|---|
| End bp | 605114 |
|---|
| Gene Length | 3228 bp |
|---|
| Protein Length | 1075 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637693401 |
|---|
| Product | heavy metal efflux pump CzcA |
|---|
| Protein accession | YP_298168 |
|---|
| Protein GI | 73537801 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.108456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAC GCATCATCCG CTTTGCCATC GAGCAGCGCT GGCTGGTCCT GCTGGCAGTG
CTTGGCATAG CGCTGCTGGG CCTCTACAGC TACAGCCGCC TGCCGATCGA CGCCGTGCCC
GACATCACCA ATGTGCAGGT GCAGATCAAT ACCGAGGCGC CCGGCTATTC GCCGCTGGAA
ACCGAGCAGC GCGTCACCTA CCCGATCGAG ACCGCCATGG CGGGCCTGCC CGGTCTGGAG
CAGACGCGCT CGCTGTCGCG CTATGGGCTG TCGCAGGTCA CCGTGATCTT CAAGGACGGC
ACCGACATCT ACTTCGCGCG CCAGCTTGTC AACCAGCGCG TGCAGGAAGC ACGCGAAAAG
CTGCCCCAAG GCATGACACC GCAGCTCGGC CCGATCTCGA CCGGTCTCGG CGAAATCTAC
CTGTGGACCG TCGAAGCCGA AGACAGCGCG CGCAAGCCTG ACGGCACGCG CTACACGCCG
ACCGACCTGC GCGAGATCCA GGACTGGATC ATCAAGCCGC AACTGCGCAC CGTCGCGGGT
GTGACGGAGA TCAACACCAT CGGCGGCTTT GCTCGCGAGT ACCTGGTCGC ACCGAGTCCC
GAACGCATGG CCTCCTATGG CTTGAGCCTG CAGGATGTGG TGCTGGCATT GGAGAAAAAC
AACAGCAACG TAGGCGCGGG CTATATCGAA CGGCGCGGGG AGCAGTATCT GGTGCGCGCA
CCGGGACAGG TCACCTCCAT GGACGATATC CGCGACGTGA TCGTCGGCAC CGCGCAGGGC
CAACCCATCC GCATCCGCGA TCTGGCCGAA GTGGGCGTCG GCCGTGAGCT GCGCACCGGC
GCGGCCACTG ACAATGGCCG CGAAGTGGTG CTCGGCACGG TCTTCATGCT GATCGGCGAG
AACAGCCGCG CGGTGTCGCG GGCGGTAGAC GTCCGCATGG CCGAGATCAA CCGCACGCTG
CCCGAGGGCG TACGCGCGGT GACCGTGTAC GACCGAACCA TACTGGTCGA CAAGGCCATC
GCTACCGTGA AGAAAAACCT GCTCGAAGGC GCGGCCCTGG TCGTGGCAGT GCTGTTCCTG
TTGCTCGGCA ACATCCGCGC GGCGGTCATC ACCGCACTGG TGATCCCGCT GTCGATGCTG
TTCACGTTCA CCGGCATGGC CACGTACCGC ATCAGCGCGA ACCTGATGAG CCTCGGTGCG
CTGGACTTCG GCATCATCGT CGACGGTGCG GTGGTCATCG TCGAAAACTG CGTGCGGCGC
CTTGCCCATG GGCAGCAGCA CCACGGCCGG CCGCTCACGC GCAGCGAACG CCTGCACGAG
GTGTTTGCGG CCGCCCGCGA AGCCCGCCGT CCGCTGGTGT TCGGGCAGCT GATCATCATG
ATCGTCTACG TGCCGATCCT TGCGCTGTCC GGCGTCGAAG GTAAGATGTT CCATCCGATG
GCGATCACAG TAGTACTGGC ACTTGCCGGC GCGATGTTGC TGTCGGTGAC CTTCGTTCCC
GCAGCCGTGG CCCTGTTCAT CGGCGACCGT GTCGCGGAGA AGGAAAACCG CCTGATGGAG
TGGGCCCGCA AGCTGTATGC GCCGGCACTG GCCCGTTCCG TAGCGAATAC GCCGGTGGTG
CTGACCTTTG CCGCGGTCGC GGTGGTGCTG AGCGGACTGG TCTCAACGCG GCTCGGCAGC
GAGTTCATCC CGAACCTCAA TGAAGGCGAC ATCGCCGTGC AGGCGCTGCG CATACCGGGC
ACGAGCCTGA GCCAGTCGGT GGCCATGCAA CAGCAGATCG AAACGCGACT CAAAGAGAAA
TTCCCTGAGA TCGAACGCGT GTTCTCGCGC ACGGGCACTG CAGAGATCGC CGCCGATCCG
ATGCCGCCCA ATGCATCGGA TGCCTACATC ATGCTGCGGC CGCGCGGCGA ATGGCCGGAC
CCGCGCAAGA CACGCGACGA ACTGCTTGTC CAGATGCAAG CGGAACTCGA GAAGATCCCC
GGCAACCGCT ATGAGTTCTC GCAGCCCATC CAGCTTCGCT TCAACGAGCT GATCTCGGGC
GTACGAAGCG ATGTCGCGGT CAAGCTGTTC GGCGACGACA ACGCGATGCT CGAAGCCACG
GCGCAGAAGA TTGCGTCCGC GCTGCAGTCG GTGCCGGGCG CCGCGGAGGT CAAGGTGGAG
CAGACGACGG GCCTGCCTGT GCTGACCGTC GCCATCGATC GCGCACGCGC GGCACGGTAC
GGTCTGAACA TGACGGACGT ACAGGACACC GTCGCCATTG CCATCGGCGG TCGCGATGCC
GGCACGCTGT TCGAAGGCGA CCGCCGCTTC CGCATCGCCG TGCGCCTGCC CGAAGATGTC
CGTGCGGACG TGGATGCATT GCGCCGCCTG CCGATCCCCT TGCCGCCCGA TGCCCGCCGC
CCCGCCGCAG CCAATGGCGT GCGTACGACA TCGAGCGACA CCGCGCCACG CACCAGTTAC
ATCCCGCTGG GCGAGATCGC CACGCTCGAC ATTGCGCCGG GACCCAACCA GGTCTCTCGC
GAGAACGGCA AGCGCCGCAT CGTGATCAGC GCCAACGTGC GCGGGCGCGA TGTCGGCAGC
TTCGTGCCCG AGGCACAGTC AGCCATCGCC GAACGCGTGA CGATTCCCAC TGGCTACTGG
ATCGCGTGGG GCGGCACATT CGAGCAGTTG CAGTCGGCCA CCGACCGTCT GCAGATCGTG
GTGCCGCTCG CGCTGCTGAT GGTATTCGTG CTGCTGTTCG CGATGTTCGG CAACCTGAAG
GACGGCTTGC TCGTGTTCAC CGGCATTCCG TTCGCGCTCA CGGGCGGCAT TCTGGCGCTG
TGGCTACGCG GCATTCCGCT GTCGATCTCG GCAGCGGTCG GCTTCATTGC GCTGTCAGGT
GTGGCGGTGC TCAACGGACT GGTGATGCTG TCATTCATCC GCAGCCTGCG CGAAGAAGGA
CTCGCACTCG ACGATGCCGT GCAGACCGGT GCGCTGAGCC GGCTGCGGCC GGTGCTGATG
ACGGCGCTGG TGGCGTCCCT TGGCTTTATC CCGATGGCAA TCGCCACAGG CACGGGCGCG
GAGGTGCAGC GGCCGCTGGC GACGGTGGTG ATTGGTGGGA TCGTGTCGTC GACAGCGCTC
ACGCTGCTGG TGTTGCCGGT GTTGTACCGG CTCGCGCACC GGCGCGATGA GCCGATGGCT
CCCGGTGAGG ACGTGCGCGA GGCGCTTGCG CAGGAGCCCC TGCGCTAG
|
|---|
| Protein sequence | MFERIIRFAI EQRWLVLLAV LGIALLGLYS YSRLPIDAVP DITNVQVQIN TEAPGYSPLE
TEQRVTYPIE TAMAGLPGLE QTRSLSRYGL SQVTVIFKDG TDIYFARQLV NQRVQEAREK
LPQGMTPQLG PISTGLGEIY LWTVEAEDSA RKPDGTRYTP TDLREIQDWI IKPQLRTVAG
VTEINTIGGF AREYLVAPSP ERMASYGLSL QDVVLALEKN NSNVGAGYIE RRGEQYLVRA
PGQVTSMDDI RDVIVGTAQG QPIRIRDLAE VGVGRELRTG AATDNGREVV LGTVFMLIGE
NSRAVSRAVD VRMAEINRTL PEGVRAVTVY DRTILVDKAI ATVKKNLLEG AALVVAVLFL
LLGNIRAAVI TALVIPLSML FTFTGMATYR ISANLMSLGA LDFGIIVDGA VVIVENCVRR
LAHGQQHHGR PLTRSERLHE VFAAAREARR PLVFGQLIIM IVYVPILALS GVEGKMFHPM
AITVVLALAG AMLLSVTFVP AAVALFIGDR VAEKENRLME WARKLYAPAL ARSVANTPVV
LTFAAVAVVL SGLVSTRLGS EFIPNLNEGD IAVQALRIPG TSLSQSVAMQ QQIETRLKEK
FPEIERVFSR TGTAEIAADP MPPNASDAYI MLRPRGEWPD PRKTRDELLV QMQAELEKIP
GNRYEFSQPI QLRFNELISG VRSDVAVKLF GDDNAMLEAT AQKIASALQS VPGAAEVKVE
QTTGLPVLTV AIDRARAARY GLNMTDVQDT VAIAIGGRDA GTLFEGDRRF RIAVRLPEDV
RADVDALRRL PIPLPPDARR PAAANGVRTT SSDTAPRTSY IPLGEIATLD IAPGPNQVSR
ENGKRRIVIS ANVRGRDVGS FVPEAQSAIA ERVTIPTGYW IAWGGTFEQL QSATDRLQIV
VPLALLMVFV LLFAMFGNLK DGLLVFTGIP FALTGGILAL WLRGIPLSIS AAVGFIALSG
VAVLNGLVML SFIRSLREEG LALDDAVQTG ALSRLRPVLM TALVASLGFI PMAIATGTGA
EVQRPLATVV IGGIVSSTAL TLLVLPVLYR LAHRRDEPMA PGEDVREALA QEPLR
|
|---|
| |