Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4418 |
Symbol | |
ID | 5541931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5673061 |
End bp | 5675346 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640896516 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_001434452 |
Protein GI | 156744323 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.868477 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0895088 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATCG CCGCCAACGC TCAAAACAAC GACGCGCCTG ACGAAGAGGT CATTTCCAGG GAAAAAGTCG AGCAACTCAT CGAGGAGTTC GAGAACGAAG CAGCAACCCG AAAACTGAGC GGCGCCTGGG CATGGATCGC CGGGATTGTT GCGGCGGCGC TCTCGATCTA TGCACTCTAC TGGACGCAGG CGATCATCAC GACTCAGGTT TACCGTGCCA CGTTCCTGAT GCTCGTCCTG GCGTTGACGT TCTTCTACTT CCCATTGCGC AAGGCTGCGC GCACGAAAGT GCCCTGGTAT GATGTTGTGC TGGCAGCGCT TGGCGCTGCC AGTATGATTT ATTTGAGCCT CAATTTCCGT GATGCGTTGC AGCGGGTCAC TCAACCCACG CCGACCGAAC TCGTGATGGG CGCCATTATG CTGCTGCTGG TGTTGGAAGC GACCCGCCGC ACCACAGGTA TGGCGCTGAC ACTGGTAGCA GTGTTCTCGA TACTGTACGC GCTCTTCGGG TATGTTTTTC CTGAACCGTT CGACCATCGC GGAATCTCGC TGCAACGTCT GATCGGCACA AACTACCTGA CATTGCAGGG TGTGTTTGGC GTGCCGCTCG ATGTGGCGGC CACATTCATC GTGCTGTTTA CGATCTATGG CGCGGTGCTG GAGTACAGCG GCGCGGGCAA GTTCTTTATC GACTGGTCCT TTGCGGCGCT CGGCAAGTCG AAGAGCGGCG CCGGCCCGGG ACGCACCGTG GCGGCGGCCG GGTTTTTGCT CGGCACCGTG TCGGGCAGTG GCGTGGCAAC GACGGTCACA CTGGGATCGC TGTCGTGGCC TATGCTGCGC AAGGCAGGGT ACGATAAGAC GGTCGCGGCC GGAATGCTGG CTGCATCCGG GATCGGCGCC ACCCTCTCGC CGCCAACCCT TGGAGCAGCA GCGTTTCTGA TCGCCGAATA CCTGGATATT TCCTATCTCG ATGTGCTGAT CATGGCGATT GTGCCGACGA TCCTCTACTA CCTGTCGATC ATTCTGATGA TCGAAGCCGA CTCGCGCCGC ATGAAGACAC AGGCGGTCAC ATTCGAGAGC GAATCGCTCT GGGAGTTGAC GCGCAAGTTT GGGTATCACT TCTCGTCGCT GTTTGCCGTC GCCATTCTGA TGGGGTTTGG CATGACGCCC TTTATGGCGG TCTACTGGTC GATTGTCGTT GCGTTCTTCC TGAGTTTTCT CCGTCCCGAA ACGCGCCTCT CCTCCCTGAA AGCGCTGGCG TCCGGCGTCG CGCTGATGGC GCTGCTGATG GCGCTGGAAG TGACCGGTGT GCTGCCGCGT ATGCGTCCAT CGGTGGCGAT CTTCTGGGGG TTAATGCTTA CCGTCGTGAT CGCGGCGGCG ATGGCGCTCT ACCGGCGGGT GCGCGCCATT CCGGGAGAAG ATGAGAACAT GCGCATTCTC AGGGCGCTGG AATATGGCGG GCGCAGTGTG GTGTCGATTG CCGCCACCAC CGCCTGCGCA GGCATCATCG TCTCAGCCGT GACGTTGACC GGACTGGGGC TTAAGATTTC GGGCATGATC GTGAGCCTTG GCGGCGGCAA CATCCTGATG ACGGTCTTCT TTGCAGCCAT TGCTGTCTGG GTATTGGGAT TGGCGGTGCC GGTCACGGCA TCGTACATTC TGGCAGCGGT CATGATCGTT CCCGCGTTGC GACAGGTGGG TGTGCCGGAA CCCGCTGCGC ATATGTTCAT TTTCTATTAT GCGGTCCTGG CTGATGTGTC GCCGCCGACT GCGCTGGCGC CTATGGCTGC CGCAGCGATT ACCGGCGGGC GTCCGTGGCC CACAATGTTT ATGGCATGGA AGTATTGTCT GCCCGGTTTC CTGGTGCCGT TCATGTTTAC GATGACGACC GACGGGACGA GTCTGCTGCT GTTGTTGCAG CAGGTTGGCA AAGATGTGGG CACGGTGACG CTGGCGTTCA AACCTGCCTG GTATGAGGCG CTGGCGGCAG GAGGGTGGAT GACGATTGTG GTGACCTTCC TGACCAGTTG CCTGGCAGTT GGCGCCCTGG CGGTCGCTTT TGGCGGATGG CTGCTCCGTC AGGCGAATCT TTTCGAGCGC GTGCTGATGG GTGTTGCCGG TTTGGCGATG CTCTATGCCG ACCTGGGAGC GGACGCCGTT GGGTTTGGGT TGTTTATTGT GGGCGTGCTG GTTCACGTGG TGCGGGTGCG CCAGATGCGC AAGGCGGAGT CGGTCGCTGT CGCCGCAGTG GAAACGGACA CGTTCAGCGA GCGCTCGGTT GGATGA
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Protein sequence | MSIAANAQNN DAPDEEVISR EKVEQLIEEF ENEAATRKLS GAWAWIAGIV AAALSIYALY WTQAIITTQV YRATFLMLVL ALTFFYFPLR KAARTKVPWY DVVLAALGAA SMIYLSLNFR DALQRVTQPT PTELVMGAIM LLLVLEATRR TTGMALTLVA VFSILYALFG YVFPEPFDHR GISLQRLIGT NYLTLQGVFG VPLDVAATFI VLFTIYGAVL EYSGAGKFFI DWSFAALGKS KSGAGPGRTV AAAGFLLGTV SGSGVATTVT LGSLSWPMLR KAGYDKTVAA GMLAASGIGA TLSPPTLGAA AFLIAEYLDI SYLDVLIMAI VPTILYYLSI ILMIEADSRR MKTQAVTFES ESLWELTRKF GYHFSSLFAV AILMGFGMTP FMAVYWSIVV AFFLSFLRPE TRLSSLKALA SGVALMALLM ALEVTGVLPR MRPSVAIFWG LMLTVVIAAA MALYRRVRAI PGEDENMRIL RALEYGGRSV VSIAATTACA GIIVSAVTLT GLGLKISGMI VSLGGGNILM TVFFAAIAVW VLGLAVPVTA SYILAAVMIV PALRQVGVPE PAAHMFIFYY AVLADVSPPT ALAPMAAAAI TGGRPWPTMF MAWKYCLPGF LVPFMFTMTT DGTSLLLLLQ QVGKDVGTVT LAFKPAWYEA LAAGGWMTIV VTFLTSCLAV GALAVAFGGW LLRQANLFER VLMGVAGLAM LYADLGADAV GFGLFIVGVL VHVVRVRQMR KAESVAVAAV ETDTFSERSV G
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