| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4334 |
|---|
| Symbol | |
|---|
| ID | 5541847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5586757 |
|---|
| End bp | 5588034 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640896440 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001434376 |
|---|
| Protein GI | 156744247 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.35369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCAGG ATGCAACTGA GATTGTACCT CTTCAACAGA GCGAAGGTCG GCAGAGTAGT
TATGCTGAAA GCATCGCATT GCCGCAGCGT GCTGGACATC TGTCCTGGAT CGCGCAGACC
GGTCTGGCAC TGACACAGTG TCGCACGGCT GCTGATGCGC TCAGTACGAT TGCGGCGCGG
CTCGATGCAG CGCCGTTTTT GCTGCGCGGC TATGTCATTC TGCTGGAAGA TGATACGTTG
CGCGTCAGGC GGGCTGTCTC GTTTGGAAAG GCGCCGGCAT TACCGGTTGC GCTGTCGCTG
TCCGGTGGTC TCTGTGGCTC AGCCATAGTG CAGAAGCGAG TGGTTGCGTC ATCAACCGGC
GGAATTGCTC TTATGTCGTG GGAACGAACC CTGGCAACCG ACGCTGCGCT GATCTGCGCG
CCCTTTACCA GCGATAGAGC GAAGGGTATT ATTATTGCCG CGTTGCCTGA TGGCGCGCAT
GATGATGTTG AGATGAGAGC GTGTCTCCAG GCGATAGCCG CTCTCGCAGG TGCAACGTTC
AATCGCGCCG CCGAGTGCGA GGCGCAACTG CTCAAGCGCA TGCGCCAGAT CGAGCAGGCG
CATACGGAGC GCCTGGCGCT GGTCGGACGC CTGACCGCCG CACTTGCCCA TGAGATCAAT
AATCCGCTCC AGGCGATTGC CAATACGCTC TATCTGTTGC AGCATCGTCC GCTCGACGAC
GAGAAACGCC AGCGCTATCT GGCGATGGCG CAGCAGGAAA CGGAACATGT GATAGCCGGT
GTTCGGCGCA TGCTCGATCT GTATCGTTCG TCGGGGCAGG AGAAACGACC GGTTGCGTTG
CATCGAGTGA TCGATCAGGC GCTGCACCAG GCTCATGATA TTCTGAATGA ACGCGCGATC
GATCTGTGTC GTGAATGGAC ATCCGACGAT CTGCGGGTGC TGGGATTTAC CGGTCATTTG
CGCTATGCCT GCTACAATCT GATTCTCAAT GCTATCTATG CAATGCCCAA AGGGGGACGG
TTGACGATTC GCACGTATCG AGAGGTCGAG GGCGCAACGC ATCTGGCAGT GGCAGAGTTT
GCAGATACAG GCGTTCCTAT CGATGATGCC GATCTGCATC GGTTGTTCGA ACCAGACGGT
CCTGTGCGGG GTGAGGCGAA CGGTATCGAA TTGCCGTTAA GCTACAGTGT CATTGAGCAG
CATAACGGCA CTCTGACCGT CCATCGGCAT GGGGACGAAA TGGTGTTTCG TGTAAGCCTT
CCCGCCATCA ATTCCTGA
|
|---|
| Protein sequence | MHQDATEIVP LQQSEGRQSS YAESIALPQR AGHLSWIAQT GLALTQCRTA ADALSTIAAR
LDAAPFLLRG YVILLEDDTL RVRRAVSFGK APALPVALSL SGGLCGSAIV QKRVVASSTG
GIALMSWERT LATDAALICA PFTSDRAKGI IIAALPDGAH DDVEMRACLQ AIAALAGATF
NRAAECEAQL LKRMRQIEQA HTERLALVGR LTAALAHEIN NPLQAIANTL YLLQHRPLDD
EKRQRYLAMA QQETEHVIAG VRRMLDLYRS SGQEKRPVAL HRVIDQALHQ AHDILNERAI
DLCREWTSDD LRVLGFTGHL RYACYNLILN AIYAMPKGGR LTIRTYREVE GATHLAVAEF
ADTGVPIDDA DLHRLFEPDG PVRGEANGIE LPLSYSVIEQ HNGTLTVHRH GDEMVFRVSL
PAINS
|
|---|
| |