Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4189 |
Symbol | |
ID | 5541700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5421031 |
End bp | 5421651 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640896299 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001434237 |
Protein GI | 156744108 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000213048 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGACC GTTCGTATTT CATCGAGGCG GCGTTGCGTT ACGAGGAACT GCTCGAATCG GGGCAGATCA TCAGCCTCGA TGCGTTTGTC GCGCAGGAGC CGCCGGAGGT GCGCGAGGAG TTGCGCGCGT TTCTCGAGTT TAACCTGACG CTCGGCGAAT TGGACGAGCC GGCGGTGCTA TCGCCGACGG AAGAGGCGGC GGCCGACCGT GTGATGGCGC TGGCGGGGGC GGCGTGGGAA CGCGAGGTGA GCGGCGGGCC GCTCCAGAAT CTGACCGACC TGCGCAAGGC GCGCCACATG ACGGTTGGGC GGCTGGCGCG CCACTTGAAA TTGCCGGTCG ATCTGCTGGC GCGCCTGGAG CGCGGCAAAG TGCGCGTTGC GACGATCCCC GAACGGTTGA TTGAGCGCCT TGCCGAGGCG CTCCAAACCA CTTCATCGGT CATTCGGGCG GCGTTGCTTG CTCCTCCTCC GATTAGCGCA AATGCGCGTT TGAACGCCGA GGATGGCATC GTTGAACCGG AGGAGATGGT CGTCAGTTTC GCACAGGCGT TTGCCGACAG CGCTCCGACC GAGGAGGAAT ACGCTGCGTG GGCTGATACG TTGTCGAGCG CCCGGCGCTG A
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Protein sequence | MKDRSYFIEA ALRYEELLES GQIISLDAFV AQEPPEVREE LRAFLEFNLT LGELDEPAVL SPTEEAAADR VMALAGAAWE REVSGGPLQN LTDLRKARHM TVGRLARHLK LPVDLLARLE RGKVRVATIP ERLIERLAEA LQTTSSVIRA ALLAPPPISA NARLNAEDGI VEPEEMVVSF AQAFADSAPT EEEYAAWADT LSSARR
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