| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4157 |
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| Symbol | |
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| ID | 5541668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5379730 |
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| End bp | 5380659 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640896268 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001434206 |
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| Protein GI | 156744077 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.530435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGATCA TTCCGAGTAT TGTCACTGCG CTTGCCATTC TCCTGGTGGT TGCCGGTCTG
ATGGCATCAC GCCGCGACGT GACGGTCGGT GAACGCCTCG ACGCCTATCT CAGCCCGACA
GTCGAGAAGG CGCCGTCCAA TCCATCGCTG GAGGCGAAAC AGCCTTTCTC CGAGCGGGTG
ATCATCCCGT TGCTGAAACG GGCGTCGCGC GCATTCGCCT GGATCATGCC ACAGAATCGC
TATGAGGCGC TGCGTCTGCG CCTGGCAATG GCTGGTTATC CGTGGGGATT GACCGCCGCC
GATTTCGTTG GCGCCAAAGG CATCGTCTGT GTGCTGGTCG GGCTGCTGAC GGGTGTGATC
GGTTGGGCGG CTGATGCTGC ACCGACTTTC TTCAATATCC TGCTGCTCGG CGGGATCGCG
CTCTGCGCCT TCTTTCTGCC CGATGTCTGG CTATCGCGCC GGATCGGTCA ACGCCAGACC
GAACTGCTCA ACGCTTTGCC CGATGCGCTC GATCTGCTGG CGATCGCTAC CGCTGCCGGT
CTCAGTTTCG AGAATGCGAT CCAGGAGATC ACATCGAAAT GGACGAACGA ACTGGCGCGT
GAGTTCAGTC GCGTATTGCG CGATATGTCG ATGGGGGTGC CGCGTCGCCA GGCGCTGACC
GATATGGCAG AACGCACCGG TGTCCCCGAC ATTGCCAGTT TCGTTTCGGC AATCAAACAG
GCGGAAGCGC TCGGCGTCAG CATCGGGCGC GTGCTGACGG TGCAGGCAGA AGAGATGCGC
ACACGGCGAC GACAGCGCGC CCAGGAGCGC GCCAATCAAG CGCCGGTCAA AATGATGTTT
CCGCTTGTCT TTCTTATCTT CCCTGCAATC TTCGCGGTGT TACTGGGTCC GGCAGTGCCA
CAGTTGCTGG AAGCGTTTGG CGGCATATGA
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| Protein sequence | MLIIPSIVTA LAILLVVAGL MASRRDVTVG ERLDAYLSPT VEKAPSNPSL EAKQPFSERV
IIPLLKRASR AFAWIMPQNR YEALRLRLAM AGYPWGLTAA DFVGAKGIVC VLVGLLTGVI
GWAADAAPTF FNILLLGGIA LCAFFLPDVW LSRRIGQRQT ELLNALPDAL DLLAIATAAG
LSFENAIQEI TSKWTNELAR EFSRVLRDMS MGVPRRQALT DMAERTGVPD IASFVSAIKQ
AEALGVSIGR VLTVQAEEMR TRRRQRAQER ANQAPVKMMF PLVFLIFPAI FAVLLGPAVP
QLLEAFGGI
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