| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4058 |
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| Symbol | |
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| ID | 5541569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5266803 |
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| End bp | 5267873 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640896170 |
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| Product | putative virion core protein (lumpy skin disease virus)-like protein |
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| Protein accession | YP_001434108 |
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| Protein GI | 156743979 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4260] Putative virion core protein (lumpy skin disease virus) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.13522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0384767 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACTGC TCGACATTGT TGAATTCGTC GATCCTACGG GCAAAACGCT GGTTGCGCGC
GTTCCGCCGG ACGGCAATGG CGAATTGCGT CTCGGTTCTC AGTGCATTGT GCGCGAAGGG
CAGCTCGCTT TCTTTGCGCG TGACGGGCGT TTCCTCGATA TGCTCATTCC GGGGCGGCAC
ACGTTGACGA GCAACAACAT TCCGCTGCTG ATCGACTTCA TCAAACTGCC GTTCGGCAGC
AAAAGCCCAT TCCGCGCCGA TGTCTACTTC GTCAGCCTGC ACCAGCACAC CGATCTGAAA
TGGGGAACGC CGCAACCAAT CCCGATGCGC GATGCGCAGT TCGGCATGGT GCGGTTGCGG
GCGTTTGGCA CATTTATCAT CCAGGTAGCC GAACCCCGCC GCTTGCTCAC TGCCGTGGTC
GGCACCCGCG GTCGCCTGAC AGTCCAGGAT GTCGAGGAGC AACTGCGCAG TTCGATTATT
GCGCGCGTTG CTGATGTCAT TGCCGAGCGC ATGCGTGAGC GTCAACTCTC GGTGCTCGAC
CTTGCGACCG AGTATGATGA ACTCTCGGAA ATGGCGCACG AAGTGTTGAA GGACGACTTT
GCCGCGCTTG GCTTGCAGTT GACGCGCTTC TACATCAACA CCATCAGCGT GCCCGAAGAA
CTCGAGCGGC GGCTCGATCA GGTCGGCGGC GTGGCAGCGT TTGGCGGATT GGGCGACTAC
ACGCGCTTCA AGGCGGCTGA AGCGCTACAC GATGCCGCGC GCACCGGAGG CGACAGCACC
GTCGGCGCAG GCATCGGGCT GGGTGCGGGA ATGAACCTTG GGGCGCTCAT GGGTCAGGTT
CTTCAGCAGC AGACGCCGAC ACAATCGCCG CCACAGCCAG CGCCGATAAC GGCGACATCC
TCACAGGCGG CAACGAAGAC ATGCCCGCGC TGTAACACGG CTATGCCTGC GAACGCCAGG
TTTTGCAGCG AGTGCGGCGC GTCGCTCCTA CCGGCGACAT GCCCGCAATG TGGACATGCA
GTGACGACTG GGGCGAAGTT CTGCATCGAA TGCGGTGCGG CGCTGAAATA A
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| Protein sequence | MPLLDIVEFV DPTGKTLVAR VPPDGNGELR LGSQCIVREG QLAFFARDGR FLDMLIPGRH
TLTSNNIPLL IDFIKLPFGS KSPFRADVYF VSLHQHTDLK WGTPQPIPMR DAQFGMVRLR
AFGTFIIQVA EPRRLLTAVV GTRGRLTVQD VEEQLRSSII ARVADVIAER MRERQLSVLD
LATEYDELSE MAHEVLKDDF AALGLQLTRF YINTISVPEE LERRLDQVGG VAAFGGLGDY
TRFKAAEALH DAARTGGDST VGAGIGLGAG MNLGALMGQV LQQQTPTQSP PQPAPITATS
SQAATKTCPR CNTAMPANAR FCSECGASLL PATCPQCGHA VTTGAKFCIE CGAALK
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