| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3746 |
|---|
| Symbol | |
|---|
| ID | 5541248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4914721 |
|---|
| End bp | 4915899 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895857 |
|---|
| Product | chlorophyllide reductase iron protein subunit X |
|---|
| Protein accession | YP_001433804 |
|---|
| Protein GI | 156743675 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1348] Nitrogenase subunit NifH (ATPase) |
|---|
| TIGRFAM ID | [TIGR02016] chlorophyllide reductase iron protein subunit X |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0605815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000012212 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCAC GCATGATCGC AATTTACGGC AAAGGCGGGA TGGGGAAGAG TTTCTTCACC
TCCAATCTGA CCGCGCGACT GGCATACGAT GGCTATCGGG TGTTACAACT CGGCTGCGAC
CCGAAGCACG ACTCGTGCAA CACGATCTTC GGTGGGCATT CGTTGCCGAC ATTAGGCGAT
CAATGGCGCC TGTTCAGAGA GGCGGGTAAA GAGGATCAGT TGTCGATTGG CGACGTGATC
TTCCGCAATG AATTGCGCCC CGGCGTCGTC ATCTTTGGCT GTGAACTCGG CGGTCCCGAG
GTCGGGCGTG GTTGCGGCGG GCAAGGAATC TCAACCGGCT TCAAGGTGCT CGAAAACCTG
GGAATGAGCC GCTGGAACCT CGACTTCATC GTAATGGACT TTCTTGGTGA TGTGGTGTGC
GGCGGGTTCG CTACACCACT CGCTCGTTCG CTTGCCGAGC AGGTGATCAT TCTCGTCGGA
CACGACCGCC AATCGCTCTA CGCAGCGAAC AATATTGCGC GCGCGGCGCA GTATTTCCGC
TCGATGGGCG GCACGACCCA GATCCTGGGG TTGGTGGTGA ACCGTGATGA TGGCAGCGAT
ACCGCCGATC AGTATGCTGC GGCAGTCGGG TTGCCGATCC TGACGCGCGT GCCGTTGAGC
CGCAAGGTGC GTGAACTTGC CGATGCCTGT CGCCTGGCGC TGGAGGACGA ACAGTTCAAT
CAAATCTTCG GCGATCTGGC GAAGCGTATT GCGCGCGGAG AATTGCAACC GGTCGATACG
TATACGCCGC TGAGTTATGA TGAGTTTCTG CGCGTGTTTG GCGCCGAAGA GCCGCCAGGA
AGACCGGACT CGGCGCGCGC CGAGGACCTG TTCGGCGAGA AGACGCCGGT CTTTACCGTG
CCTATCCTGT CGCTCAAGCC GGTCATTCCA CAGGTGCAGG TGACCGATCC GGTGCAACTC
AAAGTGCAGC AGATGATCGA AGCAATCGGT ATGTATGTCA CCGATATGGT GCGTAGTGAG
CGCGATGGCA TCACCGTCAC CTCTGGTTCG GTCGAAATTC GATTGGGAGA GCCGCAGGAC
CTTGAACATA AAGTGGCGTT CCTTTCAGCG CTGCGGCGGT CAGGACAGGC GTTCAGTTTC
GTCGATCTGC GCTACGCCGA CGCGCCGACG TATCGGTGA
|
|---|
| Protein sequence | MAPRMIAIYG KGGMGKSFFT SNLTARLAYD GYRVLQLGCD PKHDSCNTIF GGHSLPTLGD
QWRLFREAGK EDQLSIGDVI FRNELRPGVV IFGCELGGPE VGRGCGGQGI STGFKVLENL
GMSRWNLDFI VMDFLGDVVC GGFATPLARS LAEQVIILVG HDRQSLYAAN NIARAAQYFR
SMGGTTQILG LVVNRDDGSD TADQYAAAVG LPILTRVPLS RKVRELADAC RLALEDEQFN
QIFGDLAKRI ARGELQPVDT YTPLSYDEFL RVFGAEEPPG RPDSARAEDL FGEKTPVFTV
PILSLKPVIP QVQVTDPVQL KVQQMIEAIG MYVTDMVRSE RDGITVTSGS VEIRLGEPQD
LEHKVAFLSA LRRSGQAFSF VDLRYADAPT YR
|
|---|
| |