Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3615 |
Symbol | |
ID | 5541117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4725483 |
End bp | 4726772 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640895735 |
Product | Alpha-L-fucosidase |
Protein accession | YP_001433682 |
Protein GI | 156743553 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3669] Alpha-L-fucosidase |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.669923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCACAC CGGCGCCGAC GCGCGGCGAT ACGTCCTGGT TCGTTCACGA CCGCTTCGGG ATGTTCATTC ACTGGGGGTT GTACGCGCTC GCAGCACGCC ACGAGTGGGT CAAAAGCCGC GAAAAGATCG ACGACGCATC CTATCAGCGC TATTTCGACC ATTTCGACCC TGACCTGTAC GATCCGCGCG CCTGGGCGCG CGCTGCGCGT GAGGCGGGGA TGAAGTATGT GGTGATAACG ACGAAACACC ACGAGGGGTT CTGTCTGTGG GATACGCAGT ACACCGATTA TAAGGCGCCC AATACGCCGG CAAAGCGCGA TCTGCTGAAG CCGTTCGTCG AGGCGTTCCG CGCCGAAGGG TTGCGTATCG GGTTTTACTA TTCGCTGATC GACTGGCATC ATCCCGATTT TCTTATCGAT GTCTTTCATC CACTGCGCGA CCATCCAAAT GTCGCCCAAC TGAACGCCGG GCGCGATATG CGGCGTTATG CTGCATATAT GCGCAATCAG GTGCGTGAGT TACTGACCGG CTATGGATCG GTGGATATTA TCTGGTTCGA TTTTTCCTAC CCCAACCGCG AGTACAACGG CTTGCCCGGC AAAGGGCGTG TCGATTGGGA AAGTGAAGCG CTGCTGCGCC TGGTGCGCGA CCTGGCGCCC GACATTATTG TCAATAACCG CCTCGATCTG CCGACTGAGT TCGCCGATGT GCATACGCCT GAGCAGTTTC AGCCGCGTGA GTGGGTCCAT GTCGATGGCG AGCCGGTGGT GTGGGAGACG TGTCAGACGT TCAGCGGGTC GTGGGGGTAC CACCGTGATG AAATGACCTG GAAAAGCCCG GAACAACTCA TTCAGATGCT GGTCAATTCC GTGGCATGCG GTGGCAACCT GCTGATGAAT GTCGGTCCGA CGGCGCGTGG GACGTTCGAC GACCGCGCGC TTGCAGCCCT CAAGGTCTAT GCCGACTGGA TGCGCTTGCA CAGCCGCTCA ATCTATGGTT GCACGCAGAG TGAGTTTACT GCGCCGACCG ATTGCCGCTT CACGCAGAAT GGAAAGCGAC TCTACCTCCA CATTTTTTCC TGGCCCTTCC GCCATCTGCA CCTTGATGGC ATGGCAGGCA GAGTGGAGTA TGCGCAACTC CTCCATGATG CCAGCGAAGT TCGGCTGCTT GAACCGGGTA AGCACAATGA ATGGAGCATC GCCCAAACTG CTGCCGATAC GCTCACCCTG GAGTTACCGG TGGTCAAGCC CCGTGTGACT GTGCCGGTGG TGGAATTGTT CCTTCGGTGA
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Protein sequence | MLTPAPTRGD TSWFVHDRFG MFIHWGLYAL AARHEWVKSR EKIDDASYQR YFDHFDPDLY DPRAWARAAR EAGMKYVVIT TKHHEGFCLW DTQYTDYKAP NTPAKRDLLK PFVEAFRAEG LRIGFYYSLI DWHHPDFLID VFHPLRDHPN VAQLNAGRDM RRYAAYMRNQ VRELLTGYGS VDIIWFDFSY PNREYNGLPG KGRVDWESEA LLRLVRDLAP DIIVNNRLDL PTEFADVHTP EQFQPREWVH VDGEPVVWET CQTFSGSWGY HRDEMTWKSP EQLIQMLVNS VACGGNLLMN VGPTARGTFD DRALAALKVY ADWMRLHSRS IYGCTQSEFT APTDCRFTQN GKRLYLHIFS WPFRHLHLDG MAGRVEYAQL LHDASEVRLL EPGKHNEWSI AQTAADTLTL ELPVVKPRVT VPVVELFLR
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