Gene Rcas_3456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3456 
Symbol 
ID5540955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4515922 
End bp4516245 
Gene Length324 bp 
Protein Length107 aa 
Translation table11 
GC content57% 
IMG OID640895574 
Producthypothetical protein 
Protein accessionYP_001433524 
Protein GI156743395 
COG category[S] Function unknown 
COG ID[COG3254] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.022732 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCG TCGGTTTCAC CCTCAAAGTC AAGCCGGAAC TCATCGACGA GTACAAAGCC 
CATCATGCGA ACGTCTGGCC CGAGATGCTC GACGCGCTGC GACGGCACGG CTGGCGGAAC
TACACCCTCT TTATACGCCA TGACGGGCTG CTCTTCGGGT ACGTGGAAGT GCCCGAGAGT
TTCGAGAAGG CGCTGGCAGG CATGGCGACG GAAGAGGTCA ATGCGCGCTG GCAGGCGATG
ATGGCGCCAT ACTTCGAGAA CCTGAGCGGC GCCTATGCCG ATCAGAGCAT GGTCGAATTG
GAAGAAGTTT TCCATTTGGA TTAA
 
Protein sequence
MKRVGFTLKV KPELIDEYKA HHANVWPEML DALRRHGWRN YTLFIRHDGL LFGYVEVPES 
FEKALAGMAT EEVNARWQAM MAPYFENLSG AYADQSMVEL EEVFHLD