| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3351 |
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| Symbol | |
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| ID | 5540850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4375206 |
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| End bp | 4377218 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640895469 |
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| Product | hypothetical protein |
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| Protein accession | YP_001433419 |
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| Protein GI | 156743290 |
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| COG category | [A] RNA processing and modification |
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| COG ID | [COG5178] U5 snRNP spliceosome subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCCA GATACATATC TGTCGGTGAT GCGCCGCGCA TTCGCTTCGA CCGTTGCACT
GGCGCGCTGC GTGTCGAGCC GGGTGAGTCC GGTGTGCTCG AGGTCTGGGT TGAAGAAGAG
CACGAAATTG TACTGGAACA TGATGAGCAG GGAGTCGTGA TCCCCGGCGA CATCGAGGGC
GATCTCCGAT TGCGCGCGCC GACGGCCGCA ACCGTTTCTG GGGGAGTCGT TGAGGATGCT
GTTTTTGTTT CCGGCATCGC GGCATTTACC CTCGACTCGG CTCAAGACGA TGTGCGGATC
GAAGGTGTCG GCGGCGTGGT GACGCTGGGT GATGTCGAAG GTGATCTTGC CATCAACCGT
GCTGCGGCGG TCAGGGTTGG CGATGTGGCG GGAAATGCGC AGATTGCGGC AGTAGATGAA
GCGATTGTGG TGCGCCGGGT CGAAGGTGAT CTGACCGTCA GCAGCGCCGG TTCAATCGAA
GCGCAGGGTG TCGATGGTGA TCTGCGCGTG GTGGATGTGC GCGGCGCGGT GTTACTTGAG
CGCATTGCCG GTGATGTGCT CGTCGAGCGC GTCGGCGAAC TGCGGGTCGT TGAAGCCATC
GATGGCGATG TACAGGTTAA TCGGTCGGGG ACGGTCGCGT TAAGCGATGT CGCCGGCGAT
GTCGGCGTCG ATGAAGTACA GAGCCTGATG GTTGGCGCGA TTGCCGGAGA CCTCCACGCC
AGCAGCGTGT CGGAGGTCGT GCGCTTCCGC GATCTGGATG GTGACCTGCG CCTGCGCCGA
AGCGATCGCG TCGCGGTCGA AGGAGGAAGC ATCAGCGGTG ATGTGCGGGT TGACCAGGTG
CGTAGCGTGA AGCTCGGTTC GATTGGCGGT GATGCAGATA TGCGCAATGT CGGCAGCGAC
CTCAGCATCG GCAGCATTGG CGGTGACGCG ACGTTCATTG ACATTGGCGA TGATCTGAAA
GCCGGTGGTA TTGGCGGCGA CCTGATGCTG CGCAATGTGA AGAGCGCAAC CCATGTCGGG
CATGTCGGCG GCGACCTGAC GCTGGCAATG GAGTTCGCTC CGAATAGCGT CACCCGGCTG
AATGTCGGCG GCGATGCGCG CATCGAATTA CCGTCCGACG TGAGCCTGAC AGTGCGAGCA
ACGGTTGGCG GAACGGTTCG GGGTCCCGGT ATCACTGCCA GTGGCGGGAT GTTCAGTGCG
GTGTACGGTG AAGGGGCAGC GTTGCTTGAG TTGTTTATCG GCGGTGATCT GTCGCTGCGC
GGAGCGACGC CGCGCAGCAG CAGCTCGATG GGGGAGGGCG CTCCACATCC CGCGAGCGGC
TCGCGCGCTC CCAACGACGA CATCGGGCGC TGGGCGGAAC GGTTCGCCGA AGAAATGGGG
CGCTGGGGCG AGCAGTTTGG TCGGGACATG AACCGTTGGG CGGAGGAGTT CAGCCGGGAG
ATGGGTGGGC GCAGCGACGA GTGGGCACGT CGTTCGCAGC GCAAAGCCGA ACGCCTTCGC
CAGCGGATCG AGCGCGAGAT GCGCGAAGCG GCAGAACGCG CTCGTGAAAC TGCGCAACGC
GGGGGGCATC CCCGCGAGGT GCGCGTGCGT ATTAATGACC GTGAATGGCG GTTCGACGAG
GAACGACTGG AACGGATGAA GCGCGAAGCG GCAGCCGCCG CGCAAGCCGG GATCGTTGGC
GCGCTTGAAG CGGTCGAGCG TGCACTGGAA AGCATGGGCA TCCCGCGAAC GCAACCACCG
GCGCCACCTC CGCCGCCGCA TGCGCCGCCT CCGCCGCCTC CGCCGCCGCA TGCGCCGCCT
CCGCCAGCAG CGGCAACCGG TACAACGATT CGGATTAACG GCGAGCCACC CTCCGGCGAA
TCCACGCCGG TGACTGTTGA TGAAGCGCCG GTGCAGGAAA CCGCGCCGTC TGGGACGACC
ATCGAAGAGC AACGCGCCGC CATCCTGCGC ATGGTTGCCG AGGGACGGAT CACGCCGGAG
GAGGCTGACC TGCTGCTCGA GGCGCTGGGT TAG
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| Protein sequence | MPARYISVGD APRIRFDRCT GALRVEPGES GVLEVWVEEE HEIVLEHDEQ GVVIPGDIEG
DLRLRAPTAA TVSGGVVEDA VFVSGIAAFT LDSAQDDVRI EGVGGVVTLG DVEGDLAINR
AAAVRVGDVA GNAQIAAVDE AIVVRRVEGD LTVSSAGSIE AQGVDGDLRV VDVRGAVLLE
RIAGDVLVER VGELRVVEAI DGDVQVNRSG TVALSDVAGD VGVDEVQSLM VGAIAGDLHA
SSVSEVVRFR DLDGDLRLRR SDRVAVEGGS ISGDVRVDQV RSVKLGSIGG DADMRNVGSD
LSIGSIGGDA TFIDIGDDLK AGGIGGDLML RNVKSATHVG HVGGDLTLAM EFAPNSVTRL
NVGGDARIEL PSDVSLTVRA TVGGTVRGPG ITASGGMFSA VYGEGAALLE LFIGGDLSLR
GATPRSSSSM GEGAPHPASG SRAPNDDIGR WAERFAEEMG RWGEQFGRDM NRWAEEFSRE
MGGRSDEWAR RSQRKAERLR QRIEREMREA AERARETAQR GGHPREVRVR INDREWRFDE
ERLERMKREA AAAAQAGIVG ALEAVERALE SMGIPRTQPP APPPPPHAPP PPPPPPHAPP
PPAAATGTTI RINGEPPSGE STPVTVDEAP VQETAPSGTT IEEQRAAILR MVAEGRITPE
EADLLLEALG
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