| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3281 |
|---|
| Symbol | |
|---|
| ID | 5540779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4261807 |
|---|
| End bp | 4262766 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895399 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001433350 |
|---|
| Protein GI | 156743221 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1089] GDP-D-mannose dehydratase |
|---|
| TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.711314 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCAT TGATTACCGG CATCAATGGA TTCGTCGGTG GACACCTGGC AGAACACCTC
CTGGCAACCG GCGCGTGGGA CGTCGCCGGT CTTGCGCGCC AGCCCACGCT CGCGTTCGGT
GCGCTCGATG GGCGGGTGAC GTATATCGCT GCCGATCTTA ATGATCGCGA TCAGGCGCTC
ATGGCGCTCG CCAGCGTCCG ACCCGATGTT ATTTTCCATC TCGCCGGTCA ATCGAACGTT
CCACGCGCCT TTGCCGACCC GCATACGACG GTGCAGACCA ACATCGGTGC GCAGCTCAAC
CTGTTCCTCA GTGTGCTTCA GTTGCGCCTC GACCCGCTGA TGATCATCGC CAGCAGCAAC
GAAATCTATG GCATGGTGCG CCCTGAAGAA TTGCCGCTCA CCGAAGAAAC CCCGCTGCGC
CCGGTCAATC CGTATGCGGT GAGCAAAGCG GCGCAGGACC TGTTTGCCTA CCAGTACTAC
ATCAGCCACC AGTTGCGCAC GATCCGGCTA CGACCATTCA ACCACATCGG TCCCCGCCAG
ACCGAGGCGT TCGTCGTGCC GGCCTTCGCC GCACAGATCG CCCGGATCGA AGCCGGGCTG
CAACCGCCGA CGCTGCGCGT CGGCAACCTG GCGGCAGAAC GCGACTTTAG CGATGTGCGC
GACATCGCGC GCGCATACGA ACTCGCCGCC CTCTACGGTG AGGTCGGCGC AGCGTATAAT
GTCGGCAGCG AACAGGCGGT GAGCGTGCGA CGGCTCCTGG AGATTCTACT GACGTTCAGC
ACGCACGATG TGCAGATTGA ACCAGACCCG TCGCGGATGC GTCCCTCCGA TGTGCCCAGG
GTCGTGTGTA ATGCTTCGCG CTTTCGCGCC GCTACCGGAT GGAAGCCGCT CATTCCGCTG
GAGCAAACCC TGTTCGACAC ACTCGAATAC TGGCGTTCCC GGATACAGGA GCAACTATGA
|
|---|
| Protein sequence | MRALITGING FVGGHLAEHL LATGAWDVAG LARQPTLAFG ALDGRVTYIA ADLNDRDQAL
MALASVRPDV IFHLAGQSNV PRAFADPHTT VQTNIGAQLN LFLSVLQLRL DPLMIIASSN
EIYGMVRPEE LPLTEETPLR PVNPYAVSKA AQDLFAYQYY ISHQLRTIRL RPFNHIGPRQ
TEAFVVPAFA AQIARIEAGL QPPTLRVGNL AAERDFSDVR DIARAYELAA LYGEVGAAYN
VGSEQAVSVR RLLEILLTFS THDVQIEPDP SRMRPSDVPR VVCNASRFRA ATGWKPLIPL
EQTLFDTLEY WRSRIQEQL
|
|---|
| |