Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3078 |
Symbol | |
ID | 5540574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3985773 |
End bp | 3986651 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640895197 |
Product | protein tyrosine phosphatase |
Protein accession | YP_001433150 |
Protein GI | 156743021 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0394] Protein-tyrosine-phosphatase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTATGAGC CGCTCATTCT GATCGTCGGC GCTGCCGACA CCGGGCGCGC GCCGCTTGCC GCCGCGCTGC TGCGCCGCCA TTTGATGAAC CACAGCATTC CTGCGCGGGT CGAGTCTGCC GGAGTGCTCG GGCACGACGA TGACCCCGCC AGCCCGGATG CACTCACTGT TGCGGAGCAC ATGGCGCTCG ATCTCAGTGC GCATCGCGCG CGCAGTTTGA GCGACCATCT GGTCGAGGAG GCGATTCTGC TGCTGGCTAT CGATAGCGGC GCCGCTCGTG TGGCGCGCTT GCGTTTCCCA CAGGCGGCAG CGCGCATTCA CACCCTGGGG GAACTTGCCG GGCGCAATCG TGACATTCCC GACCCCTTCA AGATGCAGAT CGGTCCGTGG CTTGTCTATG CGCGAGAAAT CGACCAGATG CTCCAGCAGG CGCTGCCGCG CATTCTCGCA TTCCTTCCCG AACCATCGGC GCCCTTCGCA GAACCGGGCA CTGAGAACCG GGAACCGACC CGCGTCACGA CGCTCCTTTC CGGGCGATCC GCGCCGTTGG TGGCGGAAGA ACGACGCGCC GCCGCCGAAC GCACGGCTCA CCTGCTCGAC CTGATGACGC GCATTCCCGG TATTGTTGCC TGGAATGCGG CGCGTGAGCA GATCGAAGCC GCTATCGCGC TTGCACAGGC GCATCCCGCT GACGCAACCG ATCAGATCAC GGCATATTGC GCCCTCCTCC GCGCGGCGCT CACGCTGACG CCATCCGATC CGGGCGCAGC GCACCTTGCA GCGTTGCGCG ACGCGATTGT GCGCCTCGAG CAACCGGTTG GAACCAACGA TGTCAGCGAT CTGTCGGCGC GACTTGGCGG TTGGACATCG CTGAATTAA
|
Protein sequence | MYEPLILIVG AADTGRAPLA AALLRRHLMN HSIPARVESA GVLGHDDDPA SPDALTVAEH MALDLSAHRA RSLSDHLVEE AILLLAIDSG AARVARLRFP QAAARIHTLG ELAGRNRDIP DPFKMQIGPW LVYAREIDQM LQQALPRILA FLPEPSAPFA EPGTENREPT RVTTLLSGRS APLVAEERRA AAERTAHLLD LMTRIPGIVA WNAAREQIEA AIALAQAHPA DATDQITAYC ALLRAALTLT PSDPGAAHLA ALRDAIVRLE QPVGTNDVSD LSARLGGWTS LN
|
| |