| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2904 |
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| Symbol | |
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| ID | 5540394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3765982 |
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| End bp | 3767637 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895025 |
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| Product | spermidine synthase-like protein |
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| Protein accession | YP_001432984 |
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| Protein GI | 156742855 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCATG AGGCTACGGT TACATCGCCA GAGACGAATG CGACGGTAAA TACGGCGCCG
CGCACCGCAT CCGTGCTGGC GGGTACGGTC TTTTTGTGCG GTGTTGGCAC GCTTGGCGTC
GAAATGATCG CCTCGCGTCT GCTTGCGCCC TACTTTGGCA CATCGCAACC GATCTGGGCT
GCGGTCATTG GTCTGACGCT GGTCTACCTG GCAGTCGGGT ATCATGTTGG CGGGCGAATT
GCCGACCGCT ATCCCGACGA GCGCCTGCTC TACCGTTTGG TCCTGCTCTC CGGCGTTGCA
ACCGCGTTGA TTCCGCCGCT TGCTGCGCCT ATTCTCGGTT TTGCGCAGCG CGCAGTCGCA
CACCTCGCGG TCGGCGGCTT TATCGGCGCC CTCTTTGGTG TGCTGGCGTT GTTCGCCGTG
CCGGTGACGC TGCTGGCAAT GGTCGGACCG TTTGCGGTGC GCCTGCAACT GCACCGTGCC
GCAGCAGGCG TCAGCGTGGC AGGCGCTACT GCCGGAACAG TGTCCGCCAT TTCGACTGTC
GGTTCGATTA TCGGAACGTT CCTCACCGTC CTGGTGCTCA TTCCTGCGAT CGGCGCCGCC
GCAACGACCT ATGTGTACGC TGGCTTGCTC GTGGCGCTTG GCGCTCTTGG TGCGCGCGGC
TGGGGGGCGC TCCTGGCGCT CGCGTTGACG ACAGCCCTGG CGGGGTATAC GTTCTTCTCG
TCGGGACCGA TCAAAAGCGC CGGGTGCGAT GGATGCACGC TGATCGCCGA GTACGAATCG
CCCTACAATT ACATTCAGGT TGCGACTCGT CAGGACCCGG AGTATGGTCA GCAGGTCGTC
CTCCTGCTGA ACGAAGGGCT GGCAGTCCAT TCGATCTACA ATACTGCATA CGATGGCGAT
CCCCTCGATA CACTGACCGG CGGCGGTCCG TGGGACTATT TCGCCATTGC GCCATTTGTT
GTGCCGGGGC GCGATCCGGC ATCGGTGCGT AGTCTGGCGA TGCTCGGCTC GGCAGCCGGG
ACGACGCCGG CGCAATTTCT GGCGATCTTC GGACCCGACA CCCATATCGA TGCCGTCGAG
ATCGACCCGA TGATTATCGA TGTAGGACGG CGGTTCTTCA ATATGCGCGA TGCTGCAACC
GGTCCCGATC ATCCGAATTA TCGGGTGTAC GCCGAAGATG CGCGCTACTG GCTGGCGACC
AGGGGCGGGG TCTATGATGT GATTGGGATG GATGCCTATC ATCAGCCTTA CATTCCATTT
CATCTGACAA CGGTTGAATT CTTTCGATTG GTTCAGCAGC ATCTCGCGCC CGACGGCGTG
GCAGTGGTGA ATGCGGGATT GGGACCCGAC GGTGACGATC GGTTGAGCCG GGCGATTGTC
GCAACGATGG AACAGGTGTT TCCACAGGTG ATTGTGATTG AAACGGCGCA CCTGAGCAAT
CAGATCATCA TTGGCGTGAA CCGCAACGTT GGCGATGGCT ACGCCAACCT GCTCGATGCG
TATGCGCGCA TCGAGCATCC GGCGCTACGG CGCACCCTTG AGCGCGTGTA TGTTCCAACG
CGCCAGCCTG CTGCGACGTA TGCGCCGTTC ACCGATGATC GCGCTCCGGT TGAGCGCCTG
GTCGATTCGT TGATCTTCGA TGCCTTGACA CGCTAA
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| Protein sequence | MSHEATVTSP ETNATVNTAP RTASVLAGTV FLCGVGTLGV EMIASRLLAP YFGTSQPIWA
AVIGLTLVYL AVGYHVGGRI ADRYPDERLL YRLVLLSGVA TALIPPLAAP ILGFAQRAVA
HLAVGGFIGA LFGVLALFAV PVTLLAMVGP FAVRLQLHRA AAGVSVAGAT AGTVSAISTV
GSIIGTFLTV LVLIPAIGAA ATTYVYAGLL VALGALGARG WGALLALALT TALAGYTFFS
SGPIKSAGCD GCTLIAEYES PYNYIQVATR QDPEYGQQVV LLLNEGLAVH SIYNTAYDGD
PLDTLTGGGP WDYFAIAPFV VPGRDPASVR SLAMLGSAAG TTPAQFLAIF GPDTHIDAVE
IDPMIIDVGR RFFNMRDAAT GPDHPNYRVY AEDARYWLAT RGGVYDVIGM DAYHQPYIPF
HLTTVEFFRL VQQHLAPDGV AVVNAGLGPD GDDRLSRAIV ATMEQVFPQV IVIETAHLSN
QIIIGVNRNV GDGYANLLDA YARIEHPALR RTLERVYVPT RQPAATYAPF TDDRAPVERL
VDSLIFDALT R
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