| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2889 |
|---|
| Symbol | trmE |
|---|
| ID | 5540378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3747091 |
|---|
| End bp | 3748485 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895009 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001432969 |
|---|
| Protein GI | 156742840 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTACG ACGACACCAT TGCAGCCATT GCCACCCCTC CCGGTGAAGG GGGTATCGGC
ATTGTGCGCA TCAGCGGAAA GGATGCGCTG TCTATTCTGG AGCGCATCTT TGTGCCGGTG
CGTCCCGGTC GCTGGAAACC CTATCGGATG CGCTATGGGC ACGTGGTGGA TGGCGCCGGC
GTCAGAGTGG ACGAGGCGCT TGCCGTCTTT ATGCGTGGTC CGCGCAGTTT CACCGCTGAG
GATACTGTCG AAATCTCGGT GCATGGCGGA CCTCTGGTGG TCGAGCGCGT GTTGCAGCAG
GCGCTGGCAG CAGGCGCGCG CGCTGCCAAC CCCGGCGAGT TCACCATGCG CGCCTTTTTG
AATGGACGGA TCGATCTGAC TCAGGCGGAA GCGACGCTCG ACATCATTAC GGCGCGAACG
ACAACGGCGC TGGCGCTGGC GGAAGCGCAG TTGGGCGGAT GGCTTTCCCA CGAATTGCGC
CGCATCCGCG CTCTGCTCAT AGATCCACTG GCATACTGCA CGGCGCTGGT TGATTTCCCT
GAAGATGAGG TCGAGCCTCA GGATGTCGAG ACGCCACTGA CAGCGGCGGT TCAGGCGCTC
GATACGCTAG TTGCTACTGC GGAACAGGGG ATAATCTACC GTCAGGGGGC GCGTGCCACG
TTGGTCGGTC GCCCAAATGC TGGAAAATCA AGCCTGCTGA ATGCGCTGTT GCGCATTGAT
CGGGCGATCG TGACGCCAAT CCCCGGCACG ACGCGCGATA CCCTGGAGGA AACTGCCAAC
CTGGGGGGCG TGCCGGTGGT CTTGACCGAC ACCGCCGGGA TTGTCGAAAG CGTCGATCCG
GTCGAGCGCC TTGGTGTGGA GCGAAGCCGG CAGGCAGTGG CGCAGGCGGA CCTGTTGCTC
CTCGTGGTCG AGGGGGTGAG CCAACCCGTC GATGATGACC GTGAGATTGT GGCGTTGACT
CGAGATAAAC GCACGGTGCT GATCGTCAAC AAGATTGATC TGATCGACGG CGCCGATGCA
GTGCAAGAAT GTATGAAATT CCTCAAATGC GCGTATGAAA ATCTGCGTGG TGTGCCATTC
GACGCGACAA TTGCAGTTTC GGCATTGACC GGGCAGGGAC TGGATATGCT CGGCGCGACG
GTTGCGCGCC TGCTGCTCGG CGATTCGTCG CCTGCCGATG GGCGCCTGGT GACCAATGTG
CGTCACCGTG ACGCGCTTGC GCGCGCAGCA ACACACGCTC GTGACGCGCT CGATAGTTTT
CGGCGCGGCG TATCGCCCGA TCTGCTGGCG GTGGATCTGA CTGCGGCGAT CAATGCGATC
GGTGAGGTGA CCGGCGAGGC GGTCGGTGAC GATCTGCTCC ACGCTATTTT CAGTCGGTTC
TGCATCGGAA AGTGA
|
|---|
| Protein sequence | MMYDDTIAAI ATPPGEGGIG IVRISGKDAL SILERIFVPV RPGRWKPYRM RYGHVVDGAG
VRVDEALAVF MRGPRSFTAE DTVEISVHGG PLVVERVLQQ ALAAGARAAN PGEFTMRAFL
NGRIDLTQAE ATLDIITART TTALALAEAQ LGGWLSHELR RIRALLIDPL AYCTALVDFP
EDEVEPQDVE TPLTAAVQAL DTLVATAEQG IIYRQGARAT LVGRPNAGKS SLLNALLRID
RAIVTPIPGT TRDTLEETAN LGGVPVVLTD TAGIVESVDP VERLGVERSR QAVAQADLLL
LVVEGVSQPV DDDREIVALT RDKRTVLIVN KIDLIDGADA VQECMKFLKC AYENLRGVPF
DATIAVSALT GQGLDMLGAT VARLLLGDSS PADGRLVTNV RHRDALARAA THARDALDSF
RRGVSPDLLA VDLTAAINAI GEVTGEAVGD DLLHAIFSRF CIGK
|
|---|
| |