Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2758 |
Symbol | |
ID | 5540244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3570202 |
End bp | 3571224 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894884 |
Product | methionine synthase vitamin-B12 independent |
Protein accession | YP_001432847 |
Protein GI | 156742718 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000302857 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTCC CGCTTCTCCC GACTAGCGTC ATCGGTTCTT ACGCCTGGCC CGCCTGGTTG CACGTTGCGC TCTGGGCAGC GCAGCGCGGC GAACTTGGAC CGGAAGACAT GCGCGAAACG CAGGACGATG CCGTCGATAT GGCGCTGCGC GACCAGGAGG ATGCCGGTGT GGACATTGTG AGCGATGGGG AGATGCGACG CGCCGGTTTT TTCACTGCGG CATTCTATGG TTTTCTCACG GGGCTGCGTG AATTGCCGCC ACAGCGTCGG ATCGGCGTGG CGGGGCACGA TCAGCGCGAA AGTTACGAAG CAGTCGAACC GATCACGGCG CCCAATGGTC TTGGGTTGCT GGTCGAATAT GAGTATGTCA GGCAACGCAC GACACGCCCG ATCAAGATGC CGTGTCCTGG TCCGTTTACG CTTGCCGGAC GGATCAAGCC TGGTGCAGCA TATCGAACAC GGTGGGATGT GGCAGAGGCG CTCGTGCCGA TCATCAATGC CGAGCTGAAA GCGCTGGCAG CGGCGGGATG CACCTTCATC CAGATCGATG AGCCATCGAT TGCTGTGCGC CCTGATGCGC CGCGCGCATT TGTCGAACTG TTCAATGCGA CAGTTGCCGG CGTCGACGCT AGAATCGGGT TACACCTTTG TTTTGGCAAC TATGTCGGGC GTCCCACAGC CAGGCGCACC TATCGTCCGC TGTTTCCGCA CATTCTCGAA GCGCATGCCG ATCAGTACGC GCTGGAGTTC GCCAACCGCG AACTGGCGGA AATCGATCTG TGGCGCGAAT TTCCGAGCGA GAAAGAACTT GCCGCCGGGC TGGTCGATGT GAAGAACTAC TACATTGAGA CACCGGAGGA TGTCGCCGAG CGGATCCGGG TGGCGTTGCG GTATGTGGCG CCGGAGAAGT TGACAATCGT GCCCGACTGC GGATTCAGCC AGACGGCGCG TTGGGCGGCG CACGCCAAAC TGAAGGCGAT GGTCGAAGGG GCGCGCATGG TTCGCCGGGA ACTGGCAGGC TGA
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Protein sequence | MDLPLLPTSV IGSYAWPAWL HVALWAAQRG ELGPEDMRET QDDAVDMALR DQEDAGVDIV SDGEMRRAGF FTAAFYGFLT GLRELPPQRR IGVAGHDQRE SYEAVEPITA PNGLGLLVEY EYVRQRTTRP IKMPCPGPFT LAGRIKPGAA YRTRWDVAEA LVPIINAELK ALAAAGCTFI QIDEPSIAVR PDAPRAFVEL FNATVAGVDA RIGLHLCFGN YVGRPTARRT YRPLFPHILE AHADQYALEF ANRELAEIDL WREFPSEKEL AAGLVDVKNY YIETPEDVAE RIRVALRYVA PEKLTIVPDC GFSQTARWAA HAKLKAMVEG ARMVRRELAG
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