| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2550 |
|---|
| Symbol | |
|---|
| ID | 5540032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3289752 |
|---|
| End bp | 3290906 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640894680 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001432647 |
|---|
| Protein GI | 156742518 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000605815 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.321822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTC GACCGCTCGA TGGCTTGCTC GTACTCGATT TCAGTCAGTT CCTGGCTGGT
CCCTCGTGTG CGCTGCGCCT GGCGGATCTT GGTGCGCACG TGATTAAGAT CGAACGTCCT
GATGGCGGCG AAGCCGGGCG TCATCTTGCG ATCGCCGATC TGTTCCTGGA TGGCGACAGC
GTACTGTTTC ATACCATCAA CCGGAACAAA CTCTCCTTCG CCGCCAATCT GAAGCGTACA
GAAGACCTGG AGCGGGTATG CGCCCTGATT GCTCGCGCGG ATGTGCTGAT TCAGAACTTT
CGCCCCGGCG TCATCGAACG AGTGGGACTT GGGTACGAGG CGGTAGCGGC GATCAACCCG
CGTATCGTCT ATGCCACTGG TACAGGGTAT GGCACAACCG GTCCGCGGCG CGATCTGCCA
GGGCAGGACC TGCTGGCGCA GGCACGATCC GGACTGCCGT TTCTCAACGG CGACGCCGAT
CAACCGCCGC TTCCCTTCGG GCTTGCCATC ACCGATATTT TTGCCGGTGC GCACCTGGCG
CAGGGGGTGC TGGCATGCCT GGTACGTCGC GGTGTCACCG GGCGTGGCGG TCTGGTCGAA
GTCAGCCTAC TCGAATCGGC GCTCGACCTG CAATTCGAGG TGTTCACCGC CTACCTGAAC
GATGGCGGTC GGTTGCCGCA ACGCAGCGCC GTCAATAATG CGCATGCCTG TCTTGGCGCG
CCGTATGGCA TCTATGCAAC AGCGGACGGC TATCTGGCGC TGGCGATGGG TTCGATCCCG
CAATTGGGCG AATTGCTGGG ATGCGAAGCG CCGCTGGCGC ACACCGATCC GGCAACATGG
TTCAGCGCGC GTGATGAAAT CAAAGCGCTG ATCGCCGCGC ACCTGGCGAC TCAACCAACT
GCGTACTGGC TCGCGCGATT GGAACCGGCG GACTACTGGT GCGCCGAGGT GCTCGACTGG
GATCGGCTTA CGGCGCATCC GGGGTTTGCC GCAGTGCAGA TGGTGCAACA GGTGACGCGC
AGCAACGGAA TGACCCTGGC GACAACCCGG CGCCCGATAC GGATCGATGG CGCTGTTCTG
ACATCGCCGG TTGGCGCGCC GCGCGTCGGC GAACATAATT CTTGCCGGGT ACGGCTTGCA
ATGAGCAGGT GCTGA
|
|---|
| Protein sequence | METRPLDGLL VLDFSQFLAG PSCALRLADL GAHVIKIERP DGGEAGRHLA IADLFLDGDS
VLFHTINRNK LSFAANLKRT EDLERVCALI ARADVLIQNF RPGVIERVGL GYEAVAAINP
RIVYATGTGY GTTGPRRDLP GQDLLAQARS GLPFLNGDAD QPPLPFGLAI TDIFAGAHLA
QGVLACLVRR GVTGRGGLVE VSLLESALDL QFEVFTAYLN DGGRLPQRSA VNNAHACLGA
PYGIYATADG YLALAMGSIP QLGELLGCEA PLAHTDPATW FSARDEIKAL IAAHLATQPT
AYWLARLEPA DYWCAEVLDW DRLTAHPGFA AVQMVQQVTR SNGMTLATTR RPIRIDGAVL
TSPVGAPRVG EHNSCRVRLA MSRC
|
|---|
| |