Gene Rcas_2550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2550 
Symbol 
ID5540032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3289752 
End bp3290906 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content62% 
IMG OID640894680 
ProductL-carnitine dehydratase/bile acid-inducible protein F 
Protein accessionYP_001432647 
Protein GI156742518 
COG category[C] Energy production and conversion 
COG ID[COG1804] Predicted acyl-CoA transferases/carnitine dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000605815 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.321822 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACTC GACCGCTCGA TGGCTTGCTC GTACTCGATT TCAGTCAGTT CCTGGCTGGT 
CCCTCGTGTG CGCTGCGCCT GGCGGATCTT GGTGCGCACG TGATTAAGAT CGAACGTCCT
GATGGCGGCG AAGCCGGGCG TCATCTTGCG ATCGCCGATC TGTTCCTGGA TGGCGACAGC
GTACTGTTTC ATACCATCAA CCGGAACAAA CTCTCCTTCG CCGCCAATCT GAAGCGTACA
GAAGACCTGG AGCGGGTATG CGCCCTGATT GCTCGCGCGG ATGTGCTGAT TCAGAACTTT
CGCCCCGGCG TCATCGAACG AGTGGGACTT GGGTACGAGG CGGTAGCGGC GATCAACCCG
CGTATCGTCT ATGCCACTGG TACAGGGTAT GGCACAACCG GTCCGCGGCG CGATCTGCCA
GGGCAGGACC TGCTGGCGCA GGCACGATCC GGACTGCCGT TTCTCAACGG CGACGCCGAT
CAACCGCCGC TTCCCTTCGG GCTTGCCATC ACCGATATTT TTGCCGGTGC GCACCTGGCG
CAGGGGGTGC TGGCATGCCT GGTACGTCGC GGTGTCACCG GGCGTGGCGG TCTGGTCGAA
GTCAGCCTAC TCGAATCGGC GCTCGACCTG CAATTCGAGG TGTTCACCGC CTACCTGAAC
GATGGCGGTC GGTTGCCGCA ACGCAGCGCC GTCAATAATG CGCATGCCTG TCTTGGCGCG
CCGTATGGCA TCTATGCAAC AGCGGACGGC TATCTGGCGC TGGCGATGGG TTCGATCCCG
CAATTGGGCG AATTGCTGGG ATGCGAAGCG CCGCTGGCGC ACACCGATCC GGCAACATGG
TTCAGCGCGC GTGATGAAAT CAAAGCGCTG ATCGCCGCGC ACCTGGCGAC TCAACCAACT
GCGTACTGGC TCGCGCGATT GGAACCGGCG GACTACTGGT GCGCCGAGGT GCTCGACTGG
GATCGGCTTA CGGCGCATCC GGGGTTTGCC GCAGTGCAGA TGGTGCAACA GGTGACGCGC
AGCAACGGAA TGACCCTGGC GACAACCCGG CGCCCGATAC GGATCGATGG CGCTGTTCTG
ACATCGCCGG TTGGCGCGCC GCGCGTCGGC GAACATAATT CTTGCCGGGT ACGGCTTGCA
ATGAGCAGGT GCTGA
 
Protein sequence
METRPLDGLL VLDFSQFLAG PSCALRLADL GAHVIKIERP DGGEAGRHLA IADLFLDGDS 
VLFHTINRNK LSFAANLKRT EDLERVCALI ARADVLIQNF RPGVIERVGL GYEAVAAINP
RIVYATGTGY GTTGPRRDLP GQDLLAQARS GLPFLNGDAD QPPLPFGLAI TDIFAGAHLA
QGVLACLVRR GVTGRGGLVE VSLLESALDL QFEVFTAYLN DGGRLPQRSA VNNAHACLGA
PYGIYATADG YLALAMGSIP QLGELLGCEA PLAHTDPATW FSARDEIKAL IAAHLATQPT
AYWLARLEPA DYWCAEVLDW DRLTAHPGFA AVQMVQQVTR SNGMTLATTR RPIRIDGAVL
TSPVGAPRVG EHNSCRVRLA MSRC