| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2488 |
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| Symbol | |
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| ID | 5539969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3204124 |
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| End bp | 3204879 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640894618 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001432586 |
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| Protein GI | 156742457 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.485878 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGCA ATGAATTTCA GAACCAGGTA GCGCTCATCA CCGGCGCGTC GCGCGGCATT
GGGCGGGCGA TTGCGCTGGC AATCGCAGCG CGCGGCGGGC GCGTCCTCAT CAACTATCAA
CGCAACGCCA CTGCTGCTCA GGAAGTGGTT GCCGCCATCG AGACGATGGG AGGCGAAGCC
CTGGCATTTG CCGCCGATAT CGCCGATGAG CGCGCCGTTC AGACGATGGT GAATGCCTGT
CTTGCGCACT GGGGACGGAT TGATGCGCTC GTCAACAACG CCGGATCAAC CGACGATGCG
CCGTTCGTGC GTATGCGCCC CGATCAGTGG CGCACGGTCA TCGATATCGA TCTGACCGGC
GCATTTTTGT GCAGTCGTTC GGTATTGGCG CCAATGCGCG CGCAGAAGTA CGGGCGGATT
GTCATGATCG GCTCGCTGGC GGGGCTGGCA GGAAACGTCG GGCAGGCGAA TTACGCCGCT
GCCAAAGCGG GGCTGGTTGG ACTGGCGCGC GCCCTGGCGC GCGAGACGGC GCGCGATGGG
ATTACGGTGA ATGTGGTGGC GCCGGGATAT ATCGAGACCG ATATGCTCGC TGCACTGCCG
GCAGCGCGAC GGCAGTGGGC GCTCGATGCG ATTGCAATGG GGCGTTTCGG CACGCCAGAG
GAAGTTGCGT CAGCCGTTGT GTTTCTCCTC TCGCCATCCG CGTCGTACAT CACCGGTCAG
GTGCTGGCAG TCGATGGCGG ATGGGTGATG CCATAA
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| Protein sequence | MISNEFQNQV ALITGASRGI GRAIALAIAA RGGRVLINYQ RNATAAQEVV AAIETMGGEA
LAFAADIADE RAVQTMVNAC LAHWGRIDAL VNNAGSTDDA PFVRMRPDQW RTVIDIDLTG
AFLCSRSVLA PMRAQKYGRI VMIGSLAGLA GNVGQANYAA AKAGLVGLAR ALARETARDG
ITVNVVAPGY IETDMLAALP AARRQWALDA IAMGRFGTPE EVASAVVFLL SPSASYITGQ
VLAVDGGWVM P
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