| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2290 |
|---|
| Symbol | |
|---|
| ID | 5539771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2956290 |
|---|
| End bp | 2957477 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894423 |
|---|
| Product | PT repeat-containing protein |
|---|
| Protein accession | YP_001432391 |
|---|
| Protein GI | 156742262 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0125565 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCC GAAACAGATT TGCGATGGCT CATGCGCACC GCGCATGCAT ACTGCTTGGT
CTTGTTCTGA CCATCAGTGC ATGTGGCGCG TCCAATCCTG CTGCGGCGCC GTCCGGGTCG
CCAGCGGCAG CGCCGACCAC GGCGCCAACA ACGGCGCCGA CAGAGGCGCC GCCGACAGCA
GTGCCGACCA CGGCGCCGAC TGATACGCCG CCAACCCCTG CCCCGACGGC GGTTCCGACC
ATTGCCCCCA CCGTCGCGCC AACGGTTGTG ACGAGCGACC CGCTCACAGG TGCGCCAGCG
CTGGCGCGAG GTGCGCTCCA GCAACGCCCG ATTGTGGTGA TGATCGATAA TCATCCGAAT
GCGTACCCGC AAGCTGGTCT CGACAAAGCG GCTGTTGTTT TCGAGGCGCT GGCGGAATTC
GGATTGACCC GCTTCATGGC GATCTATGCG CCAGGGATTA CGCCGGAGGC GACCTCGATT
GGACCGGTGC GCAGTGCGCG GCTCTATTTT GTGCAGTGGG CAATGGAGTT TCGCGGTCTC
TACGTCCATG CCGGCGGCGC GCCGCAGGCG CTCGAATTGT TGCAGAACAC GGCAAGTCTG
GTCGATGTTG ATGCACTGTT CCGTGACAGG AGCGTCTACT TTACCCGCGT CAGTCAGCGC
GCCGCTCCGC ACAATCTGTA CACCGACAGC GCCACACTCG AACGCGCGTT GCGCAGTCTT
GCGCCAGAGC CGTTTGCCGA CCCGAATATT GGCTTTCTGT TCAAAACTGA TGCGCCGCTC
GATGTGCGCC CTCCTTCCCG GCGGATTGAG TATTTTTTCA TCTATCGTGA AGATCCTGCG
GGATGGACCT ACGACCCGAC GACGAACAGT TATTTGCGCT TGCGTCGGGG ACGCCCGGCT
ATCGATGCAG TGACCGGGCA GCAACTGCGG GTGAAGAATG TGGTGGTGAT GGAAGTGCCA
GAAGCGCCTA TTCCCGGTGA TGACAAGGGG CGGATCGAGC AGAAGGTGAT CGGCAGTGGA
CGGGCGCGCG TGTTTCTGGA TGGCATCGAA CGCGAAGTGA CGTGGCGTAA AGACTCGCCT
GATGATCGCC TGTTGTTCCT GGACGCTTCA GGCAATGAGA TTGCGTTCAA CCCCGGTCAG
ATCTGGATTG TGGCGCTCCC ATCGCTCGAA AACCTGACCG TTTCGTAA
|
|---|
| Protein sequence | MTFRNRFAMA HAHRACILLG LVLTISACGA SNPAAAPSGS PAAAPTTAPT TAPTEAPPTA
VPTTAPTDTP PTPAPTAVPT IAPTVAPTVV TSDPLTGAPA LARGALQQRP IVVMIDNHPN
AYPQAGLDKA AVVFEALAEF GLTRFMAIYA PGITPEATSI GPVRSARLYF VQWAMEFRGL
YVHAGGAPQA LELLQNTASL VDVDALFRDR SVYFTRVSQR AAPHNLYTDS ATLERALRSL
APEPFADPNI GFLFKTDAPL DVRPPSRRIE YFFIYREDPA GWTYDPTTNS YLRLRRGRPA
IDAVTGQQLR VKNVVVMEVP EAPIPGDDKG RIEQKVIGSG RARVFLDGIE REVTWRKDSP
DDRLLFLDAS GNEIAFNPGQ IWIVALPSLE NLTVS
|
|---|
| |