| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2118 |
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| Symbol | |
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| ID | 5539598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2721415 |
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| End bp | 2722197 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640894252 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001432221 |
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| Protein GI | 156742092 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.402238 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGGTG AACTTGCAGA GAAGGTTATC TTTTTGACTG GCGGCGCTCA GGGGATCGGA
CGGGCGTGCG CCATTGCCTA CGCCCGTGCT GGCGGCAGCG TTGTGATTGC CGACATCAAC
CTGGACCTGG CGAAAGCGAC GCTGGAGCGT GATTTGCAAG GCAACGGACT GGCCATCCAG
TGTGACGTGG CATCGTCCGA GTCTGTTCGC GCAGCAATCG AACAAACACT GGCGCACTAC
GGCAAAATTG ACGCTATCCA CAACAATGCT GCCATTTCCA GGCCATCAGC GCCGCTGCAC
GAAACCAGCG AAGAGCAATG GGATGCGCTG ATGGCAACGA ACCTGAAGAG CGTCTACTAT
ACGACGTTTT ACGGTATAGA TGCGCTCAAA GCAAGCCGCG GCTGCATTCT GAACACTGCG
AGCATGGTCG GCGTGCTGGG TCAGGAACGC CACGCGGCAT ACGTGGCGAC GAAAGGGGCC
ATGATTGCGT TGACCAAAGC CATGGCGCTC GATTACGCAT CCTATGGCAT CCGCGTGAAC
GCGATCTGTC CTGCAGCGGT CTGGACACCG TTGCTGCATG AGTGGGTGCA GGATCAGCCC
GATCCTGCCG CTGCCAGACA ATTCCTTGAT GGCATCCATG TGTTGGGATA CTGCCCGGAC
GGTGATGTGG TCGCGGATGC TGCGGTGTTT CTGTTGTCGG AACGCGCCCG CTTTATTACA
GGAGTCGCAC TGCCGGTAAG CGGTGGTGCG GAGCTAGGGT ATCGGCGCAT TGCCGCCGGA
TAA
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| Protein sequence | MMGELAEKVI FLTGGAQGIG RACAIAYARA GGSVVIADIN LDLAKATLER DLQGNGLAIQ
CDVASSESVR AAIEQTLAHY GKIDAIHNNA AISRPSAPLH ETSEEQWDAL MATNLKSVYY
TTFYGIDALK ASRGCILNTA SMVGVLGQER HAAYVATKGA MIALTKAMAL DYASYGIRVN
AICPAAVWTP LLHEWVQDQP DPAAARQFLD GIHVLGYCPD GDVVADAAVF LLSERARFIT
GVALPVSGGA ELGYRRIAAG
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