Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2114 |
Symbol | |
ID | 5539594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2716338 |
End bp | 2717852 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640894248 |
Product | ABC transporter related |
Protein accession | YP_001432217 |
Protein GI | 156742088 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACAAG TTCATCGGAT CACCAAAACA TTCCCTGGCG TCCGGGCGCT GTCCGATGTT TCTATCGACT TTGCGCCCGG CAAGATTCAC GCGCTCGTCG GAGAAAACGG CGCTGGCAAA AGCACGCTCA TCAAAATCAT CGGGGGCATT TACTCGCCAG ATTCAGGCAA GATCATCCTC GACGGAATGA CGCTGCATCT GCGTTCCTCT AAGGATGCGC TGGTCCATCA TATCAATCTG GTAAGCCAGG AAATTCAGGT CATTCCCAGA AGCACGGTGG CGGAAAATAT TATGCTCGAC AAACTTGACC GCTACCAGCG GCGTGGACAC ATCGACTGGA CGCGCCTGAA GCGGGATGCT GCCGAGTATG CGCAGATGGT CAACCTCACC ATCCCGGTAA CGCAGACGGT CGCCGATCTT AGCGTTGCGC ACAAGCAACT GATAATGATC GCACGTGCAC TTTCCGCCAA TGCACGTGTC TTGATCATGG ACGAACCAAC ATCAACCCTG ACACCGCACG AATCTGACAA CCTGCTGACA CTGCTTCGTC GTCTGAAGAA CAATGGGGTC ATCGTGATCT TTGTATCCCA CAAACTGGAA GAAGTCCTCG CCATCGCCGA CACGGTCTCC GTCCTGCGCG ACGGTGTGCT TATCGGGACC CAACCGGCGA CGGGGCTGAC CAGGGGGCAA ATTATTCACA TGATGATCGG ACGTGATGTC CGTGCGCTCG AATTAACGCC GCTGCCGGTC AATGCCACTG ACGTGGTGCT GGAAGCGCGC AATATCTGCC AGCGAGGACG CTTTCACAAC ATCAGTTTTA CGCTGCGGCG CGGCGAAATT CTTGGCTTCT ACGGAATGGT CGGTTCTGGA CGCACCGAAC TGGCGCACAT TCTGATTGGT GAGCAGCGGA TGGATAGCGG CCATGTGCTG ATCCACGGTA AACCAGCCCG TATCCGCACG ATGGCCGACA GCCTGTTCAC ATATCGCATG GGGTATATCT CTGAAAACCG CAAGGAGCAA GGACTCATCC TCAGTGCATC GATCAAGACG AACATTGCGA TAACTATCTG GCACAATCTG CGCGATCGTC TCGGTTCCAT TCGACCGGCA GCCGAAACCG CTATCGCGCG TGAGTTCATG CAGAATCTGG ATATTCACGC GCTCGATCCC GATCAATCCG TGAGCCTTCT GAGTGGCGGC AACCAACAAA AAGTAAGCAT CGCCAAATGG CTGGCGGCAC AGTGTAACAT CCTGATAATC GACGAGCCGA CGATTGGGGT TGATATTGGC GCAAAAGAGT ATATTCATCG GTTAATTTGG CGACTGGCAG CGCACGAAGG TAAATCGATC ATTCTCATCT CCTCGGACCT GCCGGAGATC ACTGCATTGG CACGACGCAT TCTGGTCTTT CGTAATTTCC GCATTGTGGG TGAAATCTGC AATAACGGCG AAAACAATGC TCCGGTGCGT GGCTACGATG ACATCAGCCA GGAGATCGCA CATCTGCTTA CGTAG
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Protein sequence | MLQVHRITKT FPGVRALSDV SIDFAPGKIH ALVGENGAGK STLIKIIGGI YSPDSGKIIL DGMTLHLRSS KDALVHHINL VSQEIQVIPR STVAENIMLD KLDRYQRRGH IDWTRLKRDA AEYAQMVNLT IPVTQTVADL SVAHKQLIMI ARALSANARV LIMDEPTSTL TPHESDNLLT LLRRLKNNGV IVIFVSHKLE EVLAIADTVS VLRDGVLIGT QPATGLTRGQ IIHMMIGRDV RALELTPLPV NATDVVLEAR NICQRGRFHN ISFTLRRGEI LGFYGMVGSG RTELAHILIG EQRMDSGHVL IHGKPARIRT MADSLFTYRM GYISENRKEQ GLILSASIKT NIAITIWHNL RDRLGSIRPA AETAIAREFM QNLDIHALDP DQSVSLLSGG NQQKVSIAKW LAAQCNILII DEPTIGVDIG AKEYIHRLIW RLAAHEGKSI ILISSDLPEI TALARRILVF RNFRIVGEIC NNGENNAPVR GYDDISQEIA HLLT
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