| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1428 |
|---|
| Symbol | |
|---|
| ID | 5538901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1822682 |
|---|
| End bp | 1823371 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640893565 |
|---|
| Product | single-stranded nucleic acid binding R3H domain-containing protein |
|---|
| Protein accession | YP_001431541 |
|---|
| Protein GI | 156741412 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1847] Predicted RNA-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.436492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTA TTGAGATCAG TGCACGCACA GTAGCGGAAG CAGTTCGTCT TGCCCTTGCA
CAACTGGGAA AAGATCGCGA TGAAGTGGCG ATTGAGGTGC TCGAACCGGG TACGAATGGC
GATGAGGCGC TTGTGCGCGT CACCGTTGTA GATGATGAGA CGGAAGAGCC GTCAGCGCCG
TCACGTGCAA CGGCGACCGG TCCCGTCGAA CAGGTTGCAC GCCAGATTCT GGAGGATATC
CTCGAACGCA TGGATATCCA TGCCTATGTT ACTGCGGTGG TCAGTGCGGT CCCTGATCAG
CGCGGCGAAC CTGAAGAGAC GATAACGCTG CATATCGAGG GCGCCGATGA AGAGGCGATG
AGCCTGCTGA TTGGACGACG CGGCGAAACC CTGCGCTCGC TCCAGTTCAT GGTCAATCTT
TTGGTCAGTC GCCGGGTGCA AAAATGGCCC CAAATCGTCG TCGATGTCGG GAATTATCGC
CAGCGCCGCC AGGAGTCGCT CGAAGGGTTG GCGCGTCGTA TGGCGGAACG GGTGCGTCAG
AGTGGACGTC CGTTGATGCT CGAGCCAATG GGCGCCTATG AACGACGCAT TGTGCATCTG
GCGTTGCGCT CCGATCCGAC GGTGTATACC GAGAGCAGCG GTGAGGGTGA GAACCGGAAA
GTTGTGATTT ATCCGGCAAA ACGATCATGA
|
|---|
| Protein sequence | MKSIEISART VAEAVRLALA QLGKDRDEVA IEVLEPGTNG DEALVRVTVV DDETEEPSAP
SRATATGPVE QVARQILEDI LERMDIHAYV TAVVSAVPDQ RGEPEETITL HIEGADEEAM
SLLIGRRGET LRSLQFMVNL LVSRRVQKWP QIVVDVGNYR QRRQESLEGL ARRMAERVRQ
SGRPLMLEPM GAYERRIVHL ALRSDPTVYT ESSGEGENRK VVIYPAKRS
|
|---|
| |