| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1275 |
|---|
| Symbol | |
|---|
| ID | 5538747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1646277 |
|---|
| End bp | 1646786 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640893413 |
|---|
| Product | phage shock protein C, PspC |
|---|
| Protein accession | YP_001431390 |
|---|
| Protein GI | 156741261 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0715782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.19244 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCT CAACACCGCG ATTAATGCGC AGCCGTGGCG ATGCACTCAT CGCTGGCGTA
GCGGGGGGAA TCGCCCGCTA CCTGGGGGTC GATTCCACGC TTGTGCGCCT GATTTTTGTT
GTGCTGGCCT TTAGCGGCGC GGGGGTGCTG CTCTACCCTC TTCTCTGGAT TATTATGCCG
CTCGAAAGGA CGCCTGCTCC GGGACGCGCC ACAAATCCCG CAGGACGAGA GCCGTTCGTG
GATGGCGAAA GGGTGCAACG TTTGCGATCC GATCCGCCAA CCGGTACGGA TGGGGATGCG
GATTCGGAGA TTCCTATCAA TAACCTGAAT GACCGCAATC CGAGCCATGC GCTGCCGTCC
GCCCGGCGAA CATGGCAGTT GGGCGTCATT CTTATCGGTG TTGGCATACT GGCGCTCCTG
AGCCTTCTCC TTGGTCCAGC ATTTGGCAAA CTCTTGTTCC CGATGGTGTT GATTGCGGCT
GGCGTGCTGG TGTTGCTGCG CAATCGGTGA
|
|---|
| Protein sequence | MDVSTPRLMR SRGDALIAGV AGGIARYLGV DSTLVRLIFV VLAFSGAGVL LYPLLWIIMP
LERTPAPGRA TNPAGREPFV DGERVQRLRS DPPTGTDGDA DSEIPINNLN DRNPSHALPS
ARRTWQLGVI LIGVGILALL SLLLGPAFGK LLFPMVLIAA GVLVLLRNR
|
|---|
| |