Gene Rcas_1111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1111 
Symbol 
ID5538577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1439991 
End bp1440476 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content58% 
IMG OID640893245 
ProductNUDIX hydrolase 
Protein accessionYP_001431228 
Protein GI156741099 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1051] ADP-ribose pyrophosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.508433 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCGGTA AACCATCGTT GCTTGCTCAT CACAAACCCA TCTATGCCGT TGGCGCGGTT 
GCCTATCGCT ATGACGCTCG TGGACGATTG CAGGTATTGG TGATCAAAAA GCGCAACGGT
TACTGGACGC TGCCCAAGGG CGGGGTGCGT CCAGGCGAAG AGCATGCCAC AGCGCTGTTG
CGTGAGTTGC GCGAAGAGAC CGGACTGGTC GGCATTGTCG AAGATGAAGT CGCGCAGGTT
CAATATATCA CGCCGCGGCG GCGACTCCCA CGACGCAAGA TTGTGACATA CTATCTGGTG
CGCGTTGCAT TGGACGCGAT TGCCATTCCT GGCGCGCATC CCGGCGAAGT GATCGAACAG
GTGCGTTGGG TGCGACCGCA AGGGGCGCAA CGGCGGGTCA AACGCAAACG GATTCGCAAC
ATCATCGCGC GCGCAGAAAC ATGCTTACGC GCGCGCAATG ATCAGAGTGT AACAGAATCT
CAATGA
 
Protein sequence
MVGKPSLLAH HKPIYAVGAV AYRYDARGRL QVLVIKKRNG YWTLPKGGVR PGEEHATALL 
RELREETGLV GIVEDEVAQV QYITPRRRLP RRKIVTYYLV RVALDAIAIP GAHPGEVIEQ
VRWVRPQGAQ RRVKRKRIRN IIARAETCLR ARNDQSVTES Q