| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1097 |
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| Symbol | |
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| ID | 5538563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1420572 |
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| End bp | 1421417 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893231 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001431214 |
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| Protein GI | 156741085 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.562508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAACG ATACGCACGA TACCGATTAT CAGCGCATCC TGCGGAATCT CAAAGCGGCA
GGACGCGCGC CGGAAGAGCC GGCGCCTGCC GGACCAGAAC CATCGCCAGC GGCAGTGCAG
GTGCGGTTCC CACTCTTTAC CCCATGGGTT GCGCGTGTGC TGTTGACGAT CAACATCATC
GTCTTTGTCG TTCCGTCGTT TCTCGATGTG ATCGGCGTTC GAATCGCGGG AACGGTGAGC
GTCTACGACT TCCTGCTCAT CTGGGGCGCG AAAGACAACG CTGCCATTTT TGTCGGCGGT
CAATACTACC GATTTCTGAC TGCCATGTTT CTGCATGGCG GACTGGCGCA CCTGTTCTTC
AATTCGTTTG CGCTCTATTC GCTGGGATTC GAGACGGAAC GGCTCTTCGG CGCGCAGCGT
TTCCTGGCGA TCTATATGCT TGCCGGTCTG GGAGGCGGCG TGGCATCCTA TGCGCTCAAC
CCCAACCCTT CCGTTGGCGC ATCCGGCGCG ATCTTTGGTC TGATCGGCGC ATTGATTGCG
TTCTACCTGG TTGCGCGTCG GGTGTTGGGC GGCATTGCGC GTCAGCAACT CGGGAGCCTG
ATCTTCATTA CGTTGATCAA TTTGGCGCTG GGGTTCACCA CACCCTACAT CGACAACAAT
GCACACATCG GCGGGCTGCT AACCGGCACA CTTCTCGGAT GGCTGCTGGC GCCACGCTTC
GCACTCGATA TGCAATCCTA CCCGCCGACA CTGGTGCGGC TCAGTCTGCG GCGTGGATGG
ATGCTGACGC TGGCAGTTTT GGTCGCGTTG GTCGCGTTGA TTGCGATCAT CGCGCCGCCG
ATCTAG
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| Protein sequence | MSNDTHDTDY QRILRNLKAA GRAPEEPAPA GPEPSPAAVQ VRFPLFTPWV ARVLLTINII
VFVVPSFLDV IGVRIAGTVS VYDFLLIWGA KDNAAIFVGG QYYRFLTAMF LHGGLAHLFF
NSFALYSLGF ETERLFGAQR FLAIYMLAGL GGGVASYALN PNPSVGASGA IFGLIGALIA
FYLVARRVLG GIARQQLGSL IFITLINLAL GFTTPYIDNN AHIGGLLTGT LLGWLLAPRF
ALDMQSYPPT LVRLSLRRGW MLTLAVLVAL VALIAIIAPP I
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