| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0936 |
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| Symbol | |
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| ID | 5538402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1242287 |
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| End bp | 1243495 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640893085 |
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| Product | GHMP kinase domain-containing protein |
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| Protein accession | YP_001431068 |
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| Protein GI | 156740939 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG3407] Mevalonate pyrophosphate decarboxylase |
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| TIGRFAM ID | [TIGR01240] diphosphomevalonate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.579277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.1124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCATC GCCCTTTGGA AAGGATGCCT GGATTGGCGA CTGCGATCCC TGCACCGTAT
GCCGATCTGG TCGAGCGAAT GGCGACTGCC GATGCTGACC TGCGCGCGGC GTTGCGGGCG
CATGGTCTGA CGTGGGAAGA ATATCCTGAC CTGACAGGCG CTGCCCGCGA ACGTGGCGCA
GCAGCGGCAC TCGCCTATCC GATGCAGGGG GTGTTGAAGT ACCACGGTTT GAGCGATTGG
GACTATCGCA TCGCCTTTCT GCCGAGTGTA TCGCTGTGCA ACGATGCCGG GCATACGCTG
ACGCTGGTCG AGTTCGACCC CGACCTTGCA ACCGATTGCG CAACCATCAA CGGGCATGTG
GCGCGCGGAC GCGAGCTCGA ACGGGTGCGC CAGAGTCTCG ACGCGATCCG CGCGGCTTCC
GGCGCCACGG TGCGCGCTCG CGTCATGTCG CGGAATGTCA CTCGCGGGAC GCGCATGGGG
AAGGGGCTTG GATCGAGCGC TGCGGCATCG GCGGCGCTGG CGCTGGCGGC GATTGCTGCC
CTGTATGGTG ACGAAGCGGC AGCGAATCGG CGTCTGGTCA GTTGCATGGC GCGGTTGCTG
GCAGGTTCCG GGTGCCGCAG CGCCGCTGGC GGGTGCTCTA TCTGGTTTTC GTCCCCTGGC
ATGCCTCACG AAGACAGTTT TGCCGTTCGC CTCGATGATG CCGGGCAACT TGATGATGTT
CGCCTGATCA CTGTGCCGCT CGACTCGCGC ATTGGGCTGA AGACCGAACA GGCGCACCTG
GATGCCCCCG GAAGCGCACT GTTTCGGTGC TGGATGCTGA GTCGACGCGA CGAAGCGCTG
GCGTGCATTG CCGCCGCGCG CACCGGCGAC TGGCGCACCC TCGGGCAGTG GGCGGAACTC
GATAGCATGC GGCTCCACGG CATTACCATG TCGGGGAGCC TGGAAAACAA ACTGATCGGC
TGGGAACCCG AAAATATCGT CCTGTTTCGC ATGTGCAACG ACCTGCGCTC GTCGGGTGTG
CCTGTCTATT GCTCCACCGA CACCGGTCCG ACGGCGGTGT TCATTACGCA CCGGGACTAT
GAGGATGCTG TGGTTTCTGC CATCGAGGGG TTGGGTCTCA GCCTCGAAGC GATCCGTGGG
CGCGTCGCCG GACCGGCGCG CCTCGTCGAT ATCGCGTGGG CGGGGGGGGA ATTAGGCGTT
GCAGATTAA
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| Protein sequence | MYHRPLERMP GLATAIPAPY ADLVERMATA DADLRAALRA HGLTWEEYPD LTGAARERGA
AAALAYPMQG VLKYHGLSDW DYRIAFLPSV SLCNDAGHTL TLVEFDPDLA TDCATINGHV
ARGRELERVR QSLDAIRAAS GATVRARVMS RNVTRGTRMG KGLGSSAAAS AALALAAIAA
LYGDEAAANR RLVSCMARLL AGSGCRSAAG GCSIWFSSPG MPHEDSFAVR LDDAGQLDDV
RLITVPLDSR IGLKTEQAHL DAPGSALFRC WMLSRRDEAL ACIAAARTGD WRTLGQWAEL
DSMRLHGITM SGSLENKLIG WEPENIVLFR MCNDLRSSGV PVYCSTDTGP TAVFITHRDY
EDAVVSAIEG LGLSLEAIRG RVAGPARLVD IAWAGGELGV AD
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