Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0869 |
Symbol | |
ID | 5538335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1138506 |
End bp | 1139072 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640893020 |
Product | hypothetical protein |
Protein accession | YP_001431003 |
Protein GI | 156740874 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000221181 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCACGC AATCGCAGGT CAGTCGTTCA GCAGCGTCGC AGGTTGTTCG CGCATCGGCA ACACCACTGC TGACGAAGAT CGAAGTCGGT GGTGCAGTCG CCGGTCTGGT TGGCGGTGTC ACGATGGCGG TGGTTGGTGC GATCCTGGCG ATTGCGATGG GCGCCGATCT GTGGAAGGCG GCAAAACTGA TTTCGACATT TGTGCTAGGG CTGGGTGCGA CCGCCGGTGA AGGGTTTGTC GCCATTCCGG TGATCGTCGG CAGCCTGATC CACCTGTCGC TCTCGGCGTT CTTTGGCGCT CTGTATGGCA CAATCTCCTG CCGCGTCTGG AAGATGCCGC TCGATTACGG CGCGCCGGTG GTGTTCGGCT TTGTGTACGG TCTGGCGATC TGGCTGATTG CCTATTTCAT TGTCCTGCCG ATTGTCAACC CACTGCTGCT CGAAATCTAT GCGCCTTCGT TCCTGATCCA GAATATGGTC TATGGGATGA TCCTGGGTAT GGTCTACGCG GCGGTGCGCT CCGCGCCCTA TATTCACTTT GAGCAGCGCT CCTCTGCACA GGCGTAG
|
Protein sequence | MSTQSQVSRS AASQVVRASA TPLLTKIEVG GAVAGLVGGV TMAVVGAILA IAMGADLWKA AKLISTFVLG LGATAGEGFV AIPVIVGSLI HLSLSAFFGA LYGTISCRVW KMPLDYGAPV VFGFVYGLAI WLIAYFIVLP IVNPLLLEIY APSFLIQNMV YGMILGMVYA AVRSAPYIHF EQRSSAQA
|
| |