| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0856 |
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| Symbol | |
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| ID | 5538322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1121758 |
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| End bp | 1123365 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893007 |
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| Product | phosphodiesterase |
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| Protein accession | YP_001430990 |
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| Protein GI | 156740861 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1418] Predicted HD superfamily hydrolase |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000301712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0173757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGC CCGTAGCCAC AGCCCGGCAG AGGGCTGTAG CATGCTGCAC CTTTACAACT
GAGCAGGAGG ACGTTGTGCA ATGGCTCGTA TGGGCCTTGC CTGCGCTGGT CATCGGACTT
GCAATCGGCG CAGGCATCGG CATTCTTATC TACAAAAACA GTGTTCAGAG CCAGATACGG
CAGATCGAGG CGGAAGCCCG ATTGCAACTG GAGGCGACGC GATCTGAGCA GAAAGATCTC
ATTCTGCGCG CAACTGATGA GGCGCTCCGG CTCCGCACCG AAGCCGAGGC GCAGATCCGC
GAAGCGCGCG CGGCGCTGGC AAAGCAGGAA GAACGGTTGC AACGAAAGGA GGAGAACCTC
GACCGCAAAA TCGAGGGGCT TGAGCGACGC GAACGGCAGC TTCAGCAACG TGAGCGTCAG
ATGGAGCAAC TCCACCAGGA AGCCGAACAT CTGCGGCAGC AACAGCGCGC GGAGCTTGAG
CGCATTTCCG CATTGAGCCA GGAAGAAGCC CGCGCCATCA TTCTGAAGCG CGTTGAAGAC
GAGACGCGCG ACGAAGCGGC GCGTCGCATT CGTGAAATTG AAAAGACGAT GCACGAAGAG
GCGGACAAAC TGGCGCGGAA AGTGATCAGC ATGGCCATTC AGCGGTGCGC TTCGGACTAT
GTAGCCGAAG TGACCGTTTC GACCGTGGCG CTCCCGAGCG AGGAGTTGAA GGGGCGCATC
ATCGGGCGCG AAGGGCGAAA CATTCGCGCA TTCGAGCAAT TAACCGGGGT TGATATTATT
GTCGATGATA CCCCGGAAGC GGTCACGCTG TCGTGCCACG ATCCAGTGCG GCGGGAAGTG
GCGCGCCTGG CGCTGATCAA GTTACTCAAG GATGGGCGCA TCCATCCGAC GCGCATTGAA
GAGGTCGTCC ATAAAACGCA GCAGGAAGTC GATCAGGTTA TGCGCGAAGA GGGCGAGCGA
GTCGCCTACG AAGCGAATGT CCAGGGTCTG CACCCTGATC TGATCAAACT GCTGGGGCGC
CTGAAATATC GGACGAGTTA CGGGCAGAAC GTACTCCAGC ACTCGCTGGA GTGCGCGCTG
CTTGCGGCGC ATATTGCTGC TGAGATCGGT GCAAACATCA ATGTGGCGAA AACTGCTGCG
TTGCTGCACG ACATCGGGAA GGCAGTCGAC CATGAGGTGC AGGGACCGCA CGCATTGATC
GGAGCTGAGA TTGCGCGTCG CCTTGGGAAA TCACCGGCAA TCGTTCACGC GATTGCCGCT
CATCATAACG ATGAAGAACC GCAAACCGTC GAAGCCTGGC TGGTTCAGGC TGTTGACGCC
ATCTCCGGCG GGCGCCCCGG AGCGCGCCGC GAGACGCTCG ACCTCTACAT CAAGCGCCTC
GAAGCGCTTG AAACAGTGGC GACGTCCTTT TCTGGCGTTC AACGCGCCTT TGCTGTTCAA
GCCGGACGCG AAGTGCGGGT GATGGTGCAA CCCGACGCTA TCGATGATCT TGGCAGTATT
CATCTTGCCC GTGATGTTGC CAAAAAGATC GAAGAGAGTT TGCAGTATCC GGGACAGATC
AAGGTGACGG TCATCCGCGA GACGCGCGCA GTGGACTATG CGCGCTGA
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| Protein sequence | MFEPVATARQ RAVACCTFTT EQEDVVQWLV WALPALVIGL AIGAGIGILI YKNSVQSQIR
QIEAEARLQL EATRSEQKDL ILRATDEALR LRTEAEAQIR EARAALAKQE ERLQRKEENL
DRKIEGLERR ERQLQQRERQ MEQLHQEAEH LRQQQRAELE RISALSQEEA RAIILKRVED
ETRDEAARRI REIEKTMHEE ADKLARKVIS MAIQRCASDY VAEVTVSTVA LPSEELKGRI
IGREGRNIRA FEQLTGVDII VDDTPEAVTL SCHDPVRREV ARLALIKLLK DGRIHPTRIE
EVVHKTQQEV DQVMREEGER VAYEANVQGL HPDLIKLLGR LKYRTSYGQN VLQHSLECAL
LAAHIAAEIG ANINVAKTAA LLHDIGKAVD HEVQGPHALI GAEIARRLGK SPAIVHAIAA
HHNDEEPQTV EAWLVQAVDA ISGGRPGARR ETLDLYIKRL EALETVATSF SGVQRAFAVQ
AGREVRVMVQ PDAIDDLGSI HLARDVAKKI EESLQYPGQI KVTVIRETRA VDYAR
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