| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0483 |
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| Symbol | |
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| ID | 5537946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 623501 |
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| End bp | 624283 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640892645 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001430631 |
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| Protein GI | 156740502 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.289001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCGAT TGAAGAATAA AATTGCGCTG ATTACCGGCG CCGCGCGCGG CATCGGTCGT
GGAATCGCGC TTTGTATGGC GGAAGAAGGC GCTGATGTCG TCCTCAACGA TCTGCCGCCG
GGTATGCCGG AGGTGGTCGA TGTTCGTTCA ACTGCCGCCG AGATCGAGAC GCTTGGCAGA
CGCGCACTGG TCGTGTATGG CGATGTGGCG AGTCGCGACG CGGTTGAGCG CATGGTCGCC
ACAGCCGTCG AGCAGTTTGG ACGGATCGAC ATTGTGGTCG CCAATGCTGC ATTTTCCATT
CGTGAACTGG TTGTCGAAGC GCAATGGGAG CACGTCCTGC GCACGATTGA GGTGACCCAA
TTCGGCGTTT TTCACACCTG TCAGGCGGCA GCGCGTCACA TGGTCGCGCG TGGCGGTCCG
GGCAAGATCA TCATTATCGG TTCAATCCTC TCGCAGATTC CCCTGCCAAC CAGCGCCGCG
TACAACATGG CGAAAGCGGC GGTGAATCAG TTTGCGCCGA CGCTGGCTGC CGAACTCGCG
CCCTACCGGA TCAACGTGAA CGTCATCAAT CCGGGGTACA TCGACACGCC GGGCGAGCGC
AAATTCGCCA CCGAGGAGGA ATTGCAGCGC GCGGCGCAGC AGATTCCGTG GGGACGCCTG
GGCACGCCGC GCGACATCGG GCGCGCGGCG GTGTTTCTCG CCAGCGACGA CGCCGATTAC
ATGACCGGCA GCGCTCTCTG TGTAGACGGC GGGTATCGGG TGGGGATGCG GCTGCCGTCG
TAG
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| Protein sequence | MQRLKNKIAL ITGAARGIGR GIALCMAEEG ADVVLNDLPP GMPEVVDVRS TAAEIETLGR
RALVVYGDVA SRDAVERMVA TAVEQFGRID IVVANAAFSI RELVVEAQWE HVLRTIEVTQ
FGVFHTCQAA ARHMVARGGP GKIIIIGSIL SQIPLPTSAA YNMAKAAVNQ FAPTLAAELA
PYRINVNVIN PGYIDTPGER KFATEEELQR AAQQIPWGRL GTPRDIGRAA VFLASDDADY
MTGSALCVDG GYRVGMRLPS
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