| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0442 |
|---|
| Symbol | |
|---|
| ID | 5537905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 557333 |
|---|
| End bp | 559621 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640892605 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430591 |
|---|
| Protein GI | 156740462 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3408] Glycogen debranching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGGAG AGATACGGAT CACAACGGAT TCTTACGGAA GGAACTCGCA GTCGTTCTCA
GTTTCCGGCT CCTGGTTCTC GGTTCTCAGT GCTCAGTTCT CGGACATCGT CGTGAAACAT
CTTCTTCCGC TCCTCATCGT TCTACTCGCC ACCTCCTGTT CCGTGCCGCA GCAATCGCCT
GTTGAGACGC CACAGTCGTC ACCTGCGCCG ATTGCAACCG TTCTGCCGAC CGCCGATGTG
TTTGCCGATT ACTGGGGGCG CTCCGGCGGC GAGGCAGCCC TGGGAAGAGC GATTGGTGCG
CCAATCCTGC TCGACGGGGC GCCGACGCAG GTCTATCAGC GCGGTATGAT AGCGCTGCTT
CCAGAAGGTC CGTCTGCACG TCCATTGCCG CCGGGATGGG CGGATGGTCC GCCGTCCGAT
CTTGCGCGCC TGCCCGTCTC GTCGTGGCGC GCTATGCTGA TGGCGCCGTC GGGCGCGACG
CCGCTGACGC CGCTTCGCGT TCAGGTGTCT GTTGCAGGCT ACACCGGGCG CGCAGCACTG
CACCTCTATG ATGGGCGCGC GCGCCTGATC GGGCGTTGGG ATGTTGTCGT GGCGAATGGC
GTGGGGGGTG TGGAGGTGGC GCCAGGAGGC GCGCTCGGCG TCCACAGCGC TCTGCTGATC
ATCGACGGCG CAATTGCCGG CGGTGCAAGC CGTCTGTACA CCCTCGACGC CGAGACCACG
CTGGTGACCG GTCAGGAACG CTTCGATGCG CTCTATCCGA TGATCCGTGG CTTTATGGAG
CAGTGCGTGC TGGAATACGC TCTCGATGGC GTTCCGGTGC GCGGGTATCG CTCACCCGAC
AATCCACTGC TCTGGTTGCG CGATCATACC TATCAGGCGC GTGGGTTTCG CTATTTCGAG
ACCGACGTCA CCAGCATGAT CGACGCCTTC CGCCGAGCGC AACGTCCCGA TGGCAGTTTT
CCCGATTTTC TGGCGCACCC TGAGTTGGGA GTTATGCGTT CTCTGCGCAA GGAGGTCGAG
GCGGATGTCG AGTATCTGTT CATTCAGGCG GTCTACGAAG CCTGGCAAAT GACCGGCGAC
GATGCCTGGC TGCGCACCAA TCTCGATGCC ATGCGGCGCG CCGCGCGTTA CGCCACCAGT
GATCCGTTGC GCTGGGATAC AGAACAAGGT CTCATCAAAC GCCCCTACAC GATCGATACC
TGGGATTTCT CCTACGGTCC CACGACAACC GATCCGACGA CGGGGAAACC GGCGCCGCGT
CACTGGATTG ATGACCAGAC GATCTGGGGC ATTTTCCACG GCGACAACAC CGGGCTGGCG
TATGCTCTCG AGTTGCTGGC GCGCATCGAG GAGCGGGTTG GCGACCCAAC ACGCGCGCAG
CAGTGGCGCA CCGAGGCGAA CGGGATCATG GACCGACTGA ATGCGTTGAG CTGGAATGGA
CGCTTCTTCA CCCATTTCGT GCCGCTGGCG CCGTTCGATA CGCCGGGTGT CGATGAAGCG
GCGCAACTCA GCCTGTCGAA CGCCTATGCG CTCAATCGCG GCGTGTTGCG CCACAATCAG
GGGCGCGCTA TCGTCGATGA ATATTTCCGG CGCGGATTGC AGCGCGGCGC GACATTCGCC
GAGTGGTACA GCATCGATCC GCCATTTCCA GAAGGGAGTT TCGGGCTTGC CGGTCGTCCC
GGCGAGCGTC CTGGCGAATA TGTTAATGGC GGGTTAATGC CGCTCGTCGG CGGCGAACTG
GCGCGGGGCG CATTCCGGTA TGGCGCCGAA CGCTACGCCT TTGAGATCCT GCACCGGTAC
TATTTTCTGA TCAGCAGCAC TGGCGCGACC TATCTCTGGT ACTATCCGGC GGGTAATCCG
GGGATTTCCG GCGCAGACAC GCTGCCGACC GACGGATGGG GCGCATCGGC GATGCTCGGC
GCGCTGATGG AAGGCGCAGC GGGCATCGAA GATCGCGCGG CGCTGTACCG CGATGTCGTC
CTCAGCCCGC GCTGGATCTT CACCCGCGAT GTGGATGGCG TGCAGGCGAT TGCGCGCTAT
GCCGCCTCGG ACGGCTATGT CGCCTACCGT TGGCGGCGGA TGAGCGGCGG CGTCGAACTT
CAGGCGACTG GATCAGGAGA GCGTATGCGC GTGCGCATCC CCTTGCCGGA AGGCGTGACT
GCACCGACCA GTGTGTTGCT GAACGGAGCG CCGCAGGACT ACACCATCGA AGACGCAAGC
GGCAGTCGGT ATGTCGTGTT TGATATGACT GCGCCATTTG GGACGGTGCA GGCGATCTGG
GCGCCATAG
|
|---|
| Protein sequence | MRGEIRITTD SYGRNSQSFS VSGSWFSVLS AQFSDIVVKH LLPLLIVLLA TSCSVPQQSP
VETPQSSPAP IATVLPTADV FADYWGRSGG EAALGRAIGA PILLDGAPTQ VYQRGMIALL
PEGPSARPLP PGWADGPPSD LARLPVSSWR AMLMAPSGAT PLTPLRVQVS VAGYTGRAAL
HLYDGRARLI GRWDVVVANG VGGVEVAPGG ALGVHSALLI IDGAIAGGAS RLYTLDAETT
LVTGQERFDA LYPMIRGFME QCVLEYALDG VPVRGYRSPD NPLLWLRDHT YQARGFRYFE
TDVTSMIDAF RRAQRPDGSF PDFLAHPELG VMRSLRKEVE ADVEYLFIQA VYEAWQMTGD
DAWLRTNLDA MRRAARYATS DPLRWDTEQG LIKRPYTIDT WDFSYGPTTT DPTTGKPAPR
HWIDDQTIWG IFHGDNTGLA YALELLARIE ERVGDPTRAQ QWRTEANGIM DRLNALSWNG
RFFTHFVPLA PFDTPGVDEA AQLSLSNAYA LNRGVLRHNQ GRAIVDEYFR RGLQRGATFA
EWYSIDPPFP EGSFGLAGRP GERPGEYVNG GLMPLVGGEL ARGAFRYGAE RYAFEILHRY
YFLISSTGAT YLWYYPAGNP GISGADTLPT DGWGASAMLG ALMEGAAGIE DRAALYRDVV
LSPRWIFTRD VDGVQAIARY AASDGYVAYR WRRMSGGVEL QATGSGERMR VRIPLPEGVT
APTSVLLNGA PQDYTIEDAS GSRYVVFDMT APFGTVQAIW AP
|
|---|
| |