Gene Rcas_0140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0140 
Symbol 
ID5537600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp168816 
End bp169763 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content57% 
IMG OID640892304 
Producthypothetical protein 
Protein accessionYP_001430293 
Protein GI156740164 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.89303 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAGCG TAGCCTTGAC CCCACGTGTA CGCCTGATCG TGCATCGTCT CTGGGAGGTG 
CTACGATCAC GCCGATGGCA GTGGACCCTG GGAGTGATCT TTTTCCTGGC AATCAATGGC
TATATCGGCT ACCGTCTCTA TCAGGATCGC GAGCAAATTG CGCAATTGAG CAATATTCGG
ATTGAATCTG TGTGGTTGGT CATTGCCTTT GGCGTGCAGA CAGCCGGTAT GCTCAATGCC
GTAGACGCCT GGAGTACGAT ATTCCGCCAT CTTGGTTATA ACCTGCCGCT ACGCATCCAC
TTTCGCATCT ACGCCCTCTC GAATCTGGCC GCACGACTAC CCGGAATAGG TGTTACTGCC
GCGAGTCGGG CATTCCTGTA CGGGCAACGC GGTGTCGATG GGATACAGGT TGCTGCCATT
GCGCTGATGG AGCCGCCGGT TTTCGGAGTC GCAGCGATCG TCGTTGCACT GGCAATGCTG
GCATTCCCAG GGAGTATTGG CAGCTTTGTG AACCCCTGGG TTCTGATTGG GGCGTTCGGC
ATTACGCTTA TCATTCTTCC ATCGCCGCTT TTTCGCCGTC TGCTTGACTG GTTGATTGCG
CGTCATCCCG GGTCTGCAAC GTTACAATGG CAACATGTGC TTATTTGGGC GGGGCGAAAT
ATACTCACGA TCGTCCTGGG AGGCATCGCA CTCTACTGCG TATGCCGCGC TGCCAGCGCC
ATTCCCGAGT CGGCGCTGGC GCTTCTGATT CAATGCTGGG CGTTGCTGGT GGTTGCGGGC
TCGTTGCTTT TCTGGATACC GGTTGAACTT GGCATCACAA GCAGCATATT GGTGCTTACG
CTTGCAATGA TGATGCCGAT GCCGCAGGCG CTCCTGCTGC TGATTGCATG GCGCGTCTGG
GGCATGCTGG TTGATCTGGT GTGGGGGACG GCGGGGCTCG CCTTGTAG
 
Protein sequence
MESVALTPRV RLIVHRLWEV LRSRRWQWTL GVIFFLAING YIGYRLYQDR EQIAQLSNIR 
IESVWLVIAF GVQTAGMLNA VDAWSTIFRH LGYNLPLRIH FRIYALSNLA ARLPGIGVTA
ASRAFLYGQR GVDGIQVAAI ALMEPPVFGV AAIVVALAML AFPGSIGSFV NPWVLIGAFG
ITLIILPSPL FRRLLDWLIA RHPGSATLQW QHVLIWAGRN ILTIVLGGIA LYCVCRAASA
IPESALALLI QCWALLVVAG SLLFWIPVEL GITSSILVLT LAMMMPMPQA LLLLIAWRVW
GMLVDLVWGT AGLAL