| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0012 |
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| Symbol | |
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| ID | 5537469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 9892 |
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| End bp | 10830 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640892177 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001430169 |
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| Protein GI | 156740040 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000378494 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000148939 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAACAG TGCTGGTCAC CGGGATCGGC GGCGTGCTGG GGAGCCTTGT TGCCGGCATT
CTGGCAACAC AGCCACGCAT GCGTGTGGTT GGCGTGGGAC GGGTCGCTCC TGAACAGATG
CCCGCCGATG TCGAGGTGCG CGTGTGCGAT ATGAGCGGCG AAACACTGCT CACCATGATG
CGCGCCTCGC GCGTGGATGC GGTTGTCCAT CTTGACATGT CCGGCGAAGA AGAGACGCTC
CCCTACGAGA TTCCCGGTCG CGGCAATGTG TATCGCGCTA TCGAAGTGCT CGGCGCCTGC
CATGCCGCAG AGGTGAAGCG CATTGTGATG CGGAGCAGCA CGCTGGTCTA CGGCGCGCGC
GCCGACGCAC CGCTGTTCTT TGCGGAGACT GCGCCACTGT CCGGCGGCGC TCCCGCCGGG
TTGCTTCAGG ATTATATCGA GATTGAACGT CTGGTGGCTG ATTTCAAAGC GCGCCATCCC
GATGTGAAGA TTACGATGGT CCGCTGTGCG CCGGTTGCCG GCAATGGCGT CCGCTCGCCT
GTCGTGCAGT TTTTTACCCG TCGCCCGGCG CCGATGCTGG CAGGGTTCGA CCCGCGGGTG
CAGGTGCTTC ACATCCACGA TGCCGCCGTC GCACTCGCGC TGGCAACTCT GAACGATCAG
GTCGATGGCG CGTTCAATGT CGCAGCGCAT CCTCCCCTGC TCCTGTCGCA GGCAATTTTG
TTCGCCGGCG GGCAGCCGCT GCCGCTGCCC GCGCTGGCGT TTCAGGCGGC ATCGTTCCTG
GAGCCGCTTC GTTCGCTGAT CGGCACGCTG CCATTCCCGA TCGAGTATCT TCAGTATGCA
TGCGTGGGCG ATACCCGCCG CGCGGTGTGT GCGTTGCACT GGGAACCGCA GCGCCGGCCA
GATGAGACGC TGCGTGAATT CGCTGCGGAT CACGCATGA
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| Protein sequence | MATVLVTGIG GVLGSLVAGI LATQPRMRVV GVGRVAPEQM PADVEVRVCD MSGETLLTMM
RASRVDAVVH LDMSGEEETL PYEIPGRGNV YRAIEVLGAC HAAEVKRIVM RSSTLVYGAR
ADAPLFFAET APLSGGAPAG LLQDYIEIER LVADFKARHP DVKITMVRCA PVAGNGVRSP
VVQFFTRRPA PMLAGFDPRV QVLHIHDAAV ALALATLNDQ VDGAFNVAAH PPLLLSQAIL
FAGGQPLPLP ALAFQAASFL EPLRSLIGTL PFPIEYLQYA CVGDTRRAVC ALHWEPQRRP
DETLREFAAD HA
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